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Rev: 127 - https://secure.bioinfweb.info/Code/svn/PhyDE2 /
Revision Information - 127
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Revision:127
Date: 12/20/18 3:00 PM
Author: SarahvanGroen
Message: ContigReferenceChangeEvent, SequenceReferenceChangeEvent, DeleteSequencesEdit, ContigReferenceTreeNode, PherogramReferenceTreeNode added.
The FileContentTreeView can now handle changes on sequences, so that the nodes are displayed/deleted when adding/removing a sequence that has a pherogram or a contig as reference. PherogramReferenceTreeNode, ContigReferenceTreeNode, SequenceReferenceChangeEvent and ContigReferenceChangeEvent have been implemented therefore.
The AbstractAddDeleteSequenceEdit has been deleted, because it is not useful anymore, that DeleteSequenceEdit and AddSequenceEdit use the same parent class. The DeleteSequencesEdit has to be implemented during further development.
Minor changes.
Action Path
Added /trunk/main/src/info/bioinfweb/phyde2/document/ContigReferenceChangeEvent.java
Modified /trunk/main/src/info/bioinfweb/phyde2/document/DefaultPhyDE2AlignmentModel.java
Deleted /trunk/main/src/info/bioinfweb/phyde2/document/PherogramChangeEvent.java
Added /trunk/main/src/info/bioinfweb/phyde2/document/PherogramReferenceChangeEvent.java
(Copy from /trunk/main/src/info/bioinfweb/phyde2/document/PherogramChangeEvent.java @ 122)
Modified /trunk/main/src/info/bioinfweb/phyde2/document/PhyDE2AlignmentModel.java
Modified /trunk/main/src/info/bioinfweb/phyde2/document/PhyDE2AlignmentModelListener.java
Added /trunk/main/src/info/bioinfweb/phyde2/document/SequenceReferenceChangeEvent.java
Modified /trunk/main/src/info/bioinfweb/phyde2/document/SingleReadContigAlignmentModel.java
Deleted /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/AbstractAddDeleteSequenceEdit.java
Modified /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/AddSequenceEdit.java
Deleted /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/DeleteSequenceEdit.java
Added /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/DeleteSequencesEdit.java
Added /trunk/main/src/info/bioinfweb/phyde2/gui/ContigReferenceTreeNode.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/ContigTab.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/FileContentTreeView.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/MainFrame.java
Added /trunk/main/src/info/bioinfweb/phyde2/gui/PherogramReferenceTreeNode.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/DeleteSequenceAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/RefreshConsensusSequenceAction.java


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