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Rev: 92 - https://secure.bioinfweb.info/Code/svn/PhyDE2 /
Revision Information - 92
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Revision:92
Date: 11/29/18 2:08 PM
Author: BenStoever
Message: Branch ExtendedDataModel reintegrated into trunk.
Action Path
Modified /trunk/main
Modified /trunk/main/src/info/bioinfweb/phyde2/Main.java
Added /trunk/main/src/info/bioinfweb/phyde2/document/DefaultPhyDE2AlignmentModel.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/DefaultPhyDE2AlignmentModel.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/document/Document.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/Document.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/document/DocumentChangeEvent.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/DocumentChangeEvent.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/document/DocumentListener.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/DocumentListener.java @ 91)
Modified /trunk/main/src/info/bioinfweb/phyde2/document/PhyDE2AlignmentModel.java
Modified /trunk/main/src/info/bioinfweb/phyde2/document/PhyDE2AlignmentModelListener.java
Added /trunk/main/src/info/bioinfweb/phyde2/document/SingleReadContigAlignmentModel.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/SingleReadContigAlignmentModel.java @ 91)
Modified /trunk/main/src/info/bioinfweb/phyde2/document/undo/AlignmentEdit.java
Added /trunk/main/src/info/bioinfweb/phyde2/document/undo/DocumentEdit.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/undo/DocumentEdit.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/document/undo/PhyDE2Edit.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/undo/PhyDE2Edit.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/AbstractAddDeleteAlignmentEdit.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/undo/edit/AbstractAddDeleteAlignmentEdit.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/AddAlignmentEdit.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/undo/edit/AddAlignmentEdit.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/DeleteAlignmentEdit.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/document/undo/edit/DeleteAlignmentEdit.java @ 91)
Modified /trunk/main/src/info/bioinfweb/phyde2/document/undo/edit/ReverseComplementEdit.java
Added /trunk/main/src/info/bioinfweb/phyde2/gui/ContigTab.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/gui/ContigTab.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/gui/FileContentTreeView.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/gui/FileContentTreeView.java @ 91)
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/MainFrame.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/Tab.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/AbstractPhyDEAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/ActionManagement.java
Added /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/AbstractAddAlignmentAction.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/gui/actions/edit/AbstractAddAlignmentAction.java @ 91)
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/AddCharSetAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/AddColumnsToCharSetAction.java
Added /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/AddContigAlignmentAction.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/gui/actions/edit/AddContigAlignmentAction.java @ 91)
Added /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/AddDefaultPhyDE2AlignmentAction.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/gui/actions/edit/AddDefaultPhyDE2AlignmentAction.java @ 91)
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/AddSequenceAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/ChangeCharSetColorAction.java
Added /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/DeleteAlignmentAction.java
(Copy from /branches/ExtendedDataModel/main/src/info/bioinfweb/phyde2/gui/actions/edit/DeleteAlignmentAction.java @ 91)
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/DeleteCharSetAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/DeleteSequenceAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/RedoAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/RedoToAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/RemoveColumnsFromCharSetAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/RenameCharSetAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/RenameSequenceAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/ReverseComplementAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/UndoAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/edit/UndoToAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/file/AbstractFileAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/file/ExportAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/file/NewAction.java
Modified /trunk/main/src/info/bioinfweb/phyde2/gui/actions/file/OpenAction.java


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