- TAG_ABSENT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ABSENT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ACCESSION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ACCESSION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ADAPTER - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_ADAPTER - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_ALIGNMENT - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_ALIGNMENT - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_ALPHA - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ALPHA - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ALT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ALT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ANNOTATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ANNOTATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_AUTHORITY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_AUTHORITY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BC - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BC - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BINARY_CHARACTERS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BINARY_CHARACTERS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BLOCK - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_BLOCK - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_BLUE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BLUE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BRANCH - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_BRANCH - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_BRANCH_COLOR - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BRANCH_COLOR - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BRANCH_LENGTH - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BRANCH_LENGTH - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BRANCH_WIDTH - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_BRANCH_WIDTH - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CELL - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_CELL - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_CHAR - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_CHAR - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_CHARACTERS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_CHARACTERS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_CHARSET - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_CHARSET - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_CHARSETS - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_CHARSETS - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_CLADE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CLADE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CLADE_RELATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CLADE_RELATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CODE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CODE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_COMMON_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_COMMON_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CONFIDENCE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CONFIDENCE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CROSS_REFERENCES - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_CROSS_REFERENCES - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DATE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DATE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DESC - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DESC - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DESCRIPTION - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_DESCRIPTION - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_DESCRIPTION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DESCRIPTION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DISTRIBUTION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DISTRIBUTION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DOCUMENT_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_DOCUMENT_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_DOMAIN - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DOMAIN - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DOMAIN_ARCHITECTURE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DOMAIN_ARCHITECTURE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DUPLICATIONS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_DUPLICATIONS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_EDGE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_EDGE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_EVENTS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_EVENTS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_FORMAT - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_FORMAT - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_GAINED - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_GAINED - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_GENE_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_GENE_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_GLOBAL_FORMATS - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_GLOBAL_FORMATS - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_GREEN - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_GREEN - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_HEADER - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_HEADER - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_HIDDEN_DATA - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_HIDDEN_DATA - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_ICON_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_ICON_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_ID - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ID - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LABEL_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LABEL_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LAT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LAT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LEAF_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LEAF_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LEGEND - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LEGEND - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LEGEND_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LEGEND_MARGIN - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_LOCATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LOCATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LONG - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LONG - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LOSSES - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LOSSES - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LOST - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_LOST - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_MATRIX - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_MATRIX - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_MATRIX - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_MATRIX - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_MAXIMUM - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_MAXIMUM - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_MEMBER - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_MEMBER - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_META - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_META - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_META_TYPE_DEFINITIONS - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_META_TYPE_DEFINITIONS - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_MINIMUM - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_MINIMUM - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_MOL_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_MOL_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_NETWORK - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_NETWORK - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_NODE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_NODE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_NODE - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_NODE - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_NODE_BRANCH_DATA_ADAPTERS - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_NODE_BRANCH_DATA_ADAPTERS - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_NODE_ID - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_NODE_ID - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_OTU - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_OTU - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_OTUS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_OTUS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_PARENT_OF_ROOT - Static variable in class info.bioinfweb.jphyloio.formats.xml.AbstractXMLEventReader
-
- TAG_PARENT_OF_ROOT - Static variable in class info.bioinfweb.jphyloio.formats.xml.AbstractXMLEventReader
-
- TAG_PHYLOGENY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_PHYLOGENY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_PIE_CHART_ID - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_PIE_CHART_ID - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_PIE_CHART_IDS - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_PIE_CHART_IDS - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_PIE_CHART_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_PIE_CHART_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_POINT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_POINT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_POLYGON - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_POLYGON - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_POLYMORPHIC - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_POLYMORPHIC - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_PRESENT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_PRESENT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_PROPERTY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_PROPERTY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_RANK - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_RANK - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_RED - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_RED - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_REFERENCE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_REFERENCE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_ROOT - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_ROOTEDGE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_ROOTEDGE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_ROW - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_ROW - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_SCALE_BAR - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_SCALE_BAR - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_SCI_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SCI_NAME - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_SEQUENCE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SEQUENCE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SEQUENCE_INFORMATION - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_SEQUENCE_INFORMATION - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_SEQUENCE_META_INFORMATION - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_SEQUENCE_META_INFORMATION - Static variable in interface info.bioinfweb.jphyloio.formats.pde.PDEConstants
-
- TAG_SEQUENCE_RELATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SEQUENCE_RELATION - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SET - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_SET - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_SPECIATIONS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SPECIATIONS - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_STATE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_STATE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_STATES - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_STATES - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_SYMBOL - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SYMBOL - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SYNONYM - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_SYNONYM - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_TAXONOMY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_TAXONOMY - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_TEXT_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_TEXT_LABEL - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.xtg.XTGConstants
-
- TAG_TREES - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_TREES - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_TYPE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_TYPE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_UNCERTAIN - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_UNCERTAIN - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TAG_URI - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_URI - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_VALUE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TAG_VALUE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TaxaBlockHandler - Class in info.bioinfweb.jphyloio.formats.nexus.blockhandlers
-
- TaxaBlockHandler - Class in info.bioinfweb.jphyloio.formats.nexus.blockhandlers
-
- TaxaBlockHandler() - Constructor for class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TaxaBlockHandler
-
- TaxaBlockHandler() - Constructor for class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TaxaBlockHandler
-
- TaxLabelsReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa
-
- TaxLabelsReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa
-
- TaxLabelsReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa.TaxLabelsReader
-
- TaxLabelsReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa.TaxLabelsReader
-
- TaxSetReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets
-
- TaxSetReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets
-
- TaxSetReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.TaxSetReader
-
- TaxSetReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.TaxSetReader
-
- TERMINAL_SYMBOL - Static variable in interface info.bioinfweb.jphyloio.formats.newick.NewickConstants
-
- TERMINAL_SYMBOL - Static variable in interface info.bioinfweb.jphyloio.formats.newick.NewickConstants
-
- TextReaderStreamDataProvider<R extends AbstractTextEventReader<? extends TextReaderStreamDataProvider<R>>> - Class in info.bioinfweb.jphyloio.formats.text
-
- TextReaderStreamDataProvider<R extends AbstractTextEventReader<? extends TextReaderStreamDataProvider<R>>> - Class in info.bioinfweb.jphyloio.formats.text
-
- TextReaderStreamDataProvider(R) - Constructor for class info.bioinfweb.jphyloio.formats.text.TextReaderStreamDataProvider
-
- TextReaderStreamDataProvider(R) - Constructor for class info.bioinfweb.jphyloio.formats.text.TextReaderStreamDataProvider
-
- TextSequenceContentReceiver<P extends TextWriterStreamDataProvider<? extends AbstractTextEventWriter<P>>> - Class in info.bioinfweb.jphyloio.formats.text
-
Receiver that writes all encountered sequence tokens and comments to the current line and ignores all metadata.
- TextSequenceContentReceiver<P extends TextWriterStreamDataProvider<? extends AbstractTextEventWriter<P>>> - Class in info.bioinfweb.jphyloio.formats.text
-
Receiver that writes all encountered sequence tokens and comments to the current line and ignores all metadata.
- TextSequenceContentReceiver(P, ReadWriteParameterMap, boolean, String, String) - Constructor for class info.bioinfweb.jphyloio.formats.text.TextSequenceContentReceiver
-
- TextSequenceContentReceiver(P, ReadWriteParameterMap, boolean, String, String) - Constructor for class info.bioinfweb.jphyloio.formats.text.TextSequenceContentReceiver
-
- TextWriterStreamDataProvider<W extends AbstractTextEventWriter<? extends TextWriterStreamDataProvider<W>>> - Class in info.bioinfweb.jphyloio.formats.text
-
- TextWriterStreamDataProvider<W extends AbstractTextEventWriter<? extends TextWriterStreamDataProvider<W>>> - Class in info.bioinfweb.jphyloio.formats.text
-
- TextWriterStreamDataProvider(W) - Constructor for class info.bioinfweb.jphyloio.formats.text.TextWriterStreamDataProvider
-
- TextWriterStreamDataProvider(W) - Constructor for class info.bioinfweb.jphyloio.formats.text.TextWriterStreamDataProvider
-
- TimeTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
-
- TimeTranslator - Class in info.bioinfweb.jphyloio.objecttranslation.implementations
-
- TimeTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.TimeTranslator
-
- TimeTranslator() - Constructor for class info.bioinfweb.jphyloio.objecttranslation.implementations.TimeTranslator
-
- TitleReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all
-
- TitleReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all
-
- TitleReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.all.TitleReader
-
- TitleReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.all.TitleReader
-
- toBlockName() - Method in enum info.bioinfweb.jphyloio.formats.nexus.NexusMatrixWriteResult
-
- toBlockName() - Method in enum info.bioinfweb.jphyloio.formats.nexus.NexusMatrixWriteResult
-
- TokenDefinitionLabelHandling - Enum in info.bioinfweb.jphyloio.formats.nexml
-
- TokenDefinitionLabelHandling - Enum in info.bioinfweb.jphyloio.formats.nexml
-
- TokenSetDefinitionEvent - Class in info.bioinfweb.jphyloio.events
-
Event that indicates that a (predefined) definition of a character state set was found in the parsed file.
- TokenSetDefinitionEvent - Class in info.bioinfweb.jphyloio.events
-
Event that indicates that a (predefined) definition of a character state set was found in the parsed file.
- TokenSetDefinitionEvent(CharacterStateSetType, String, String) - Constructor for class info.bioinfweb.jphyloio.events.TokenSetDefinitionEvent
-
Creates a new instance of this class.
- TokenSetDefinitionEvent(CharacterStateSetType, String, String) - Constructor for class info.bioinfweb.jphyloio.events.TokenSetDefinitionEvent
-
Creates a new instance of this class.
- TokenSetEventReceiver - Class in info.bioinfweb.jphyloio.formats.nexus.receivers
-
- TokenSetEventReceiver - Class in info.bioinfweb.jphyloio.formats.nexus.receivers
-
- TokenSetEventReceiver(NexusWriterStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.receivers.TokenSetEventReceiver
-
- TokenSetEventReceiver(NexusWriterStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.receivers.TokenSetEventReceiver
-
- TokenTranslationStrategy - Enum in info.bioinfweb.jphyloio.formats.nexml
-
Instances of this enum can be used as parameter values for ReadWriteParameterNames#KEY_NEXML_TOKEN_TRANSLATION_STRATEGY
.
- TokenTranslationStrategy - Enum in info.bioinfweb.jphyloio.formats.nexml
-
Instances of this enum can be used as parameter values for ReadWriteParameterNames#KEY_NEXML_TOKEN_TRANSLATION_STRATEGY
.
- TopoplogicalNodeInfo - Class in info.bioinfweb.jphyloio.utils
-
- TopoplogicalNodeInfo - Class in info.bioinfweb.jphyloio.utils
-
- TopoplogicalNodeInfo() - Constructor for class info.bioinfweb.jphyloio.utils.TopoplogicalNodeInfo
-
- TopoplogicalNodeInfo() - Constructor for class info.bioinfweb.jphyloio.utils.TopoplogicalNodeInfo
-
- toString() - Method in class info.bioinfweb.jphyloio.events.EdgeEvent
-
- toString() - Method in class info.bioinfweb.jphyloio.events.EdgeEvent
-
- toString() - Method in class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
-
Returns the stored string representation of the modeled metadata element if available.
- toString() - Method in class info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent
-
Returns the stored string representation of the modeled metadata element if available.
- toString() - Method in class info.bioinfweb.jphyloio.events.meta.URIOrStringIdentifier
-
- toString() - Method in class info.bioinfweb.jphyloio.events.meta.URIOrStringIdentifier
-
- toString() - Method in class info.bioinfweb.jphyloio.events.type.EventType
-
- toString() - Method in class info.bioinfweb.jphyloio.events.type.EventType
-
- toString() - Method in enum info.bioinfweb.jphyloio.formats.newick.NewickTokenType
-
- toString() - Method in enum info.bioinfweb.jphyloio.formats.newick.NewickTokenType
-
- toString() - Method in enum info.bioinfweb.jphyloio.formats.pde.PDEMetaColumnType
-
- toString() - Method in enum info.bioinfweb.jphyloio.formats.pde.PDEMetaColumnType
-
- toString() - Method in enum info.bioinfweb.jphyloio.formats.phyloxml.PropertyOwner
-
- toString() - Method in enum info.bioinfweb.jphyloio.formats.phyloxml.PropertyOwner
-
- toString() - Method in class info.bioinfweb.jphyloio.formats.xml.elementreaders.XMLElementReaderKey
-
- toString() - Method in class info.bioinfweb.jphyloio.formats.xml.elementreaders.XMLElementReaderKey
-
- TranslateReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees
-
- TranslateReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees
-
- TranslateReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees.TranslateReader
-
- TranslateReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees.TranslateReader
-
- TreeNetworkDataAdapter - Interface in info.bioinfweb.jphyloio.dataadapters
-
Data adapter interface that provides data for a tree or a network.
- TreeNetworkDataAdapter - Interface in info.bioinfweb.jphyloio.dataadapters
-
Data adapter interface that provides data for a tree or a network.
- TreeNetworkGroupDataAdapter - Interface in info.bioinfweb.jphyloio.dataadapters
-
- TreeNetworkGroupDataAdapter - Interface in info.bioinfweb.jphyloio.dataadapters
-
- TreeReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees
-
- TreeReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees
-
- TreeReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees.TreeReader
-
- TreeReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees.TreeReader
-
- TreesBlockHandler - Class in info.bioinfweb.jphyloio.formats.nexus.blockhandlers
-
- TreesBlockHandler - Class in info.bioinfweb.jphyloio.formats.nexus.blockhandlers
-
- TreesBlockHandler() - Constructor for class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TreesBlockHandler
-
- TreesBlockHandler() - Constructor for class info.bioinfweb.jphyloio.formats.nexus.blockhandlers.TreesBlockHandler
-
- TreeSetReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets
-
- TreeSetReader - Class in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets
-
- TreeSetReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.TreeSetReader
-
- TreeSetReader(NexusReaderStreamDataProvider) - Constructor for class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.TreeSetReader
-
- TreeTopologyExtractor - Class in info.bioinfweb.jphyloio.utils
-
- TreeTopologyExtractor - Class in info.bioinfweb.jphyloio.utils
-
- TreeTopologyExtractor(TreeNetworkDataAdapter, ReadWriteParameterMap) - Constructor for class info.bioinfweb.jphyloio.utils.TreeTopologyExtractor
-
- TreeTopologyExtractor(TreeNetworkDataAdapter, ReadWriteParameterMap) - Constructor for class info.bioinfweb.jphyloio.utils.TreeTopologyExtractor
-
- TYPE_CONTIN_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_CONTIN_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_CONTIN_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_CONTIN_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_DNA_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_DNA_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_DNA_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_DNA_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_FLOAT_NETWORK - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_FLOAT_NETWORK - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_FLOAT_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_FLOAT_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_INT_NETWORK - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_INT_NETWORK - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_INT_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_INT_TREE - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_LITERAL_META - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_LITERAL_META - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_NETWORK_EDGE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TYPE_NETWORK_EDGE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- TYPE_PROTEIN_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_PROTEIN_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_PROTEIN_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_PROTEIN_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RESOURCE_META - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RESOURCE_META - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RESTRICTION_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RESTRICTION_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RESTRICTION_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RESTRICTION_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RNA_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RNA_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RNA_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_RNA_SEQS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_STANDARD_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_STANDARD_CELLS - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_STANDARD_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-
- TYPE_STANDARD_SEQ - Static variable in interface info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants
-