Package | Description |
---|---|
info.bioinfweb.jphyloio.formats.newick |
Contains classes for reading from and writing to streams/files in Newick tree format.
|
info.bioinfweb.jphyloio.formats.phyloxml |
Contains classes for reading from and writing to streams/files in PhyloXML format.
|
info.bioinfweb.jphyloio.objecttranslation |
Contains classes used by readers and writers that convert between (complex) Java objects and their text or XML representation.
|
info.bioinfweb.jphyloio.objecttranslation.implementations |
Contains implementations of
ObjectTranslator . |
Modifier and Type | Method and Description |
---|---|
static NewickUtils.ReadElement |
NewickUtils.readNextElement(String text,
int start,
int end) |
static NewickUtils.ReadElement |
NewickUtils.readNextElement(String text,
int start,
int end) |
Modifier and Type | Method and Description |
---|---|
Color |
PhyloXMLColorTranslator.readXMLRepresentation(XMLEventReader reader,
ReaderStreamDataProvider<?> streamDataProvider) |
Color |
PhyloXMLColorTranslator.readXMLRepresentation(XMLEventReader reader,
ReaderStreamDataProvider<?> streamDataProvider) |
Color |
PhyloXMLColorTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
Color |
PhyloXMLColorTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
Modifier and Type | Method and Description |
---|---|
O |
ObjectTranslator.readXMLRepresentation(XMLEventReader reader,
ReaderStreamDataProvider<?> streamDataProvider)
Tries to create a new instance of the handled object type from the data provided by the specified XML reader.
|
O |
ObjectTranslator.readXMLRepresentation(XMLEventReader reader,
ReaderStreamDataProvider<?> streamDataProvider)
Tries to create a new instance of the handled object type from the data provided by the specified XML reader.
|
O |
ObjectTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider)
Converts the specified string representation to a new instance of the according Java object.
|
O |
ObjectTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider)
Converts the specified string representation to a new instance of the according Java object.
|
Modifier and Type | Method and Description |
---|---|
static List<Object> |
ListTranslator.parseList(String representation)
Reads a string representation of a simple value list into an implementation of
List . |
static List<Object> |
ListTranslator.parseList(String representation)
Reads a string representation of a simple value list into an implementation of
List . |
O |
SimpleValueTranslator.readXMLRepresentation(XMLEventReader reader,
ReaderStreamDataProvider<?> streamDataProvider)
Reads an object from the character data available at the current position of the XML reader.
|
O |
SimpleValueTranslator.readXMLRepresentation(XMLEventReader reader,
ReaderStreamDataProvider<?> streamDataProvider)
Reads an object from the character data available at the current position of the XML reader.
|
O |
AbstractXMLObjectTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
O |
IllegalArgumentExceptionSimpleValueTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
List<Object> |
ListTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider)
Reads a string representation of a simple value list into an implementation of
List . |
O |
NumericValueTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
String |
StringTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
URI |
URITranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
O |
AbstractXMLObjectTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
O |
IllegalArgumentExceptionSimpleValueTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
O |
NumericValueTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
List<Object> |
ListTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider)
Reads a string representation of a simple value list into an implementation of
List . |
URI |
URITranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |
String |
StringTranslator.representationToJava(String representation,
ReaderStreamDataProvider<?> streamDataProvider) |