Package | Description |
---|---|
info.bioinfweb.jphyloio.formats.nexml |
Contains classes for reading from and writing to streams/files in NeXML format.
|
info.bioinfweb.jphyloio.formats.nexml.receivers |
Contains implementations for
JPhyloIOEventReceiver necessary for writing
NeXML. |
info.bioinfweb.jphyloio.formats.phyloxml.receivers |
Contains implementations for
JPhyloIOEventReceiver necessary for writing
PhyloXML. |
Modifier and Type | Method and Description |
---|---|
void |
NeXMLWriterStreamDataProvider.addToDocumentIDs(String id) |
void |
NeXMLWriterStreamDataProvider.addToDocumentIDs(String id) |
void |
NeXMLWriterAlignmentInformation.setAlignmentType(CharacterStateSetType alignmentType) |
void |
NeXMLWriterAlignmentInformation.setAlignmentType(CharacterStateSetType alignmentType) |
void |
NeXMLWriterStreamDataProvider.writeLabeledIDAttributes(LabeledIDEvent event) |
void |
NeXMLWriterStreamDataProvider.writeLabeledIDAttributes(LabeledIDEvent event) |
void |
NeXMLWriterStreamDataProvider.writeLabeledIDAttributes(LabeledIDEvent event,
String about) |
void |
NeXMLWriterStreamDataProvider.writeLabeledIDAttributes(LabeledIDEvent event,
String about) |
void |
NeXMLWriterStreamDataProvider.writeLinkedLabeledIDAttributes(LinkedLabeledIDEvent event,
QName linkAttribute,
boolean forceOTULink) |
void |
NeXMLWriterStreamDataProvider.writeLinkedLabeledIDAttributes(LinkedLabeledIDEvent event,
QName linkAttribute,
boolean forceOTULink) |
Modifier and Type | Method and Description |
---|---|
static void |
AbstractNeXMLDataReceiverMixin.checkLiteralMeta(NeXMLWriterStreamDataProvider streamDataProvider,
LiteralMetadataEvent event) |
static void |
AbstractNeXMLDataReceiverMixin.checkLiteralMeta(NeXMLWriterStreamDataProvider streamDataProvider,
LiteralMetadataEvent event) |
static void |
AbstractNeXMLDataReceiverMixin.handleLiteralMeta(NeXMLWriterStreamDataProvider streamDataProvider,
LiteralMetadataEvent event) |
static void |
AbstractNeXMLDataReceiverMixin.handleLiteralMeta(NeXMLWriterStreamDataProvider streamDataProvider,
LiteralMetadataEvent event) |
static void |
AbstractNeXMLDataReceiverMixin.handleResourceMeta(NeXMLWriterStreamDataProvider streamDataProvider,
ResourceMetadataEvent event) |
static void |
AbstractNeXMLDataReceiverMixin.handleResourceMeta(NeXMLWriterStreamDataProvider streamDataProvider,
ResourceMetadataEvent event) |
protected void |
NeXMLCollectSequenceDataReceiver.handleToken(String token,
String label) |
protected void |
NeXMLCollectSequenceDataReceiver.handleToken(String token,
String label) |
Modifier and Type | Method and Description |
---|---|
protected void |
PhyloXMLMetaDataReceiver.writePropertyTag(URIOrStringIdentifier predicate,
URIOrStringIdentifier datatype,
String value,
boolean writeEndElement) |
protected void |
PhyloXMLMetaDataReceiver.writePropertyTag(URIOrStringIdentifier predicate,
URIOrStringIdentifier datatype,
String value,
boolean writeEndElement) |