- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLColorTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLColorTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractXMLObjectTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractXMLObjectTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.Base64BinaryTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.Base64BinaryTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTimeTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTimeTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.DateTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.HexBinaryTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.HexBinaryTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.ListTranslator
-
Creates the string representation of a simple value list from any object that implements
Iterable
.
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.ListTranslator
-
Creates the string representation of a simple value list from any object that implements
Iterable
.
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.QNameTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.QNameTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.SimpleValueTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.SimpleValueTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.StringTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.StringTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.TimeTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.TimeTranslator
-
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator
-
Converts the specified Java object to its string representation.
- javaToRepresentation(Object, WriterStreamDataProvider<?>) - Method in interface info.bioinfweb.jphyloio.objecttranslation.ObjectTranslator
-
Converts the specified Java object to its string representation.
- JPhyloIO - Class in info.bioinfweb.jphyloio
-
Singleton main class that provides information about this library at runtime.
- JPhyloIO - Class in info.bioinfweb.jphyloio
-
Singleton main class that provides information about this library at runtime.
- JPHYLOIO_ATTRIBUTES_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_ATTRIBUTES_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_ATTRIBUTES_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_ATTRIBUTES_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_DATA_TYPE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
The namespace for data types defined in JPhyloIO.
- JPHYLOIO_DATA_TYPE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
The namespace for data types defined in JPhyloIO.
- JPHYLOIO_DATA_TYPE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_DATA_TYPE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_FORMATS_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_FORMATS_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_GENERAL_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_GENERAL_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_NAMESPACE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_PHYLOXML_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- JPHYLOIO_PHYLOXML_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.formats.phyloxml.PhyloXMLConstants
-
- JPHYLOIO_PREDICATE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_PREDICATE_NAMESPACE - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_PREDICATE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPHYLOIO_PREDICATE_PREFIX - Static variable in interface info.bioinfweb.jphyloio.ReadWriteConstants
-
- JPhyloIOContentExtensionFileFilter - Class in info.bioinfweb.jphyloio.factory
-
- JPhyloIOContentExtensionFileFilter - Class in info.bioinfweb.jphyloio.factory
-
- JPhyloIOContentExtensionFileFilter(SingleReaderWriterFactory, ReadWriteParameterMap, String, boolean, ContentExtensionFileFilter.TestStrategy, boolean, String...) - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOContentExtensionFileFilter
-
- JPhyloIOContentExtensionFileFilter(SingleReaderWriterFactory, ReadWriteParameterMap, String, boolean, ContentExtensionFileFilter.TestStrategy, boolean, String...) - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOContentExtensionFileFilter
-
- JPhyloIOEvent - Interface in info.bioinfweb.jphyloio.events
-
This interface is implemented by all events generated by implementations of
JPhyloIOEventReader
.
- JPhyloIOEvent - Interface in info.bioinfweb.jphyloio.events
-
This interface is implemented by all events generated by implementations of
JPhyloIOEventReader
.
- JPhyloIOEventListener - Interface in info.bioinfweb.jphyloio.push
-
Interface to be implemented by classes that listen to
JPhyloIOEvent
s.
- JPhyloIOEventListener - Interface in info.bioinfweb.jphyloio.push
-
Interface to be implemented by classes that listen to
JPhyloIOEvent
s.
- JPhyloIOEventReader - Interface in info.bioinfweb.jphyloio
-
This is main JPhyloIO interface to be implemented by all format specific event readers.
- JPhyloIOEventReader - Interface in info.bioinfweb.jphyloio
-
This is main JPhyloIO interface to be implemented by all format specific event readers.
- JPhyloIOEventReceiver - Interface in info.bioinfweb.jphyloio.dataadapters
-
Implementations of this interface are used by JPhyloIO writers to receive events
from the application (generated from its business model).
- JPhyloIOEventReceiver - Interface in info.bioinfweb.jphyloio.dataadapters
-
Implementations of this interface are used by JPhyloIO writers to receive events
from the application (generated from its business model).
- JPhyloIOEventWriter - Interface in info.bioinfweb.jphyloio
-
The main JPhyloIO interface to be implemented by all format specific event writers.
- JPhyloIOEventWriter - Interface in info.bioinfweb.jphyloio
-
The main JPhyloIO interface to be implemented by all format specific event writers.
- JPhyloIOFormatIDs - Interface in info.bioinfweb.jphyloio.formats
-
Provides unique IDs for all formats that are supported by JPhyloIO.
- JPhyloIOFormatIDs - Interface in info.bioinfweb.jphyloio.formats
-
Provides unique IDs for all formats that are supported by JPhyloIO.
- JPhyloIOFormatInfo - Interface in info.bioinfweb.jphyloio.formatinfo
-
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
- JPhyloIOFormatInfo - Interface in info.bioinfweb.jphyloio.formatinfo
-
Classes implementing this interface provide information about a phylogenetic file format that is supported by JPhyloIO.
- JPhyloIOFormatSpecificObject - Interface in info.bioinfweb.jphyloio
-
Interface to be implemented by all format-specific classes (e.g.
- JPhyloIOFormatSpecificObject - Interface in info.bioinfweb.jphyloio
-
Interface to be implemented by all format-specific classes (e.g.
- JPhyloIOReaderException - Exception in info.bioinfweb.jphyloio.exception
-
- JPhyloIOReaderException - Exception in info.bioinfweb.jphyloio.exception
-
- JPhyloIOReaderException(String, long, long, long, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, long, long, long) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, Location, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, Location) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, StreamLocationProvider, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, StreamLocationProvider) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, long, long, long, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, long, long, long) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, Location, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, Location) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, StreamLocationProvider, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderException(String, StreamLocationProvider) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOReaderException
-
- JPhyloIOReaderWriterFactory - Class in info.bioinfweb.jphyloio.factory
-
Factory to create instances of
JPhyloIO event readers and writers as well as
JPhyloIOFormatInfo
instances.
- JPhyloIOReaderWriterFactory - Class in info.bioinfweb.jphyloio.factory
-
Factory to create instances of
JPhyloIO event readers and writers as well as
JPhyloIOFormatInfo
instances.
- JPhyloIOReaderWriterFactory() - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory
-
- JPhyloIOReaderWriterFactory() - Constructor for class info.bioinfweb.jphyloio.factory.JPhyloIOReaderWriterFactory
-
- JPhyloIOReadingUtils - Class in info.bioinfweb.jphyloio.utils
-
Provides tool methods to be used by application developers when implementing a reader class that processes
events from an implementations of
JPhyloIOEventReader
and stores relevant content in the application
business model.
- JPhyloIOReadingUtils - Class in info.bioinfweb.jphyloio.utils
-
Provides tool methods to be used by application developers when implementing a reader class that processes
events from an implementations of
JPhyloIOEventReader
and stores relevant content in the application
business model.
- JPhyloIOReadingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOReadingUtils
-
- JPhyloIOReadingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOReadingUtils
-
- JPhyloIOWriterException - Exception in info.bioinfweb.jphyloio.exception
-
- JPhyloIOWriterException - Exception in info.bioinfweb.jphyloio.exception
-
- JPhyloIOWriterException() - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWriterException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWriterException(String) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWriterException(Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWriterException() - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWriterException(String, Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWriterException(String) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWriterException(Throwable) - Constructor for exception info.bioinfweb.jphyloio.exception.JPhyloIOWriterException
-
- JPhyloIOWritingUtils - Class in info.bioinfweb.jphyloio.utils
-
- JPhyloIOWritingUtils - Class in info.bioinfweb.jphyloio.utils
-
- JPhyloIOWritingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOWritingUtils
-
- JPhyloIOWritingUtils() - Constructor for class info.bioinfweb.jphyloio.utils.JPhyloIOWritingUtils
-
- JPhyloIOXMLEventReader - Interface in info.bioinfweb.jphyloio.formats.xml
-
Interface providing basic functionality for all JPhyloIO readers of XML formats.
- JPhyloIOXMLEventReader - Interface in info.bioinfweb.jphyloio.formats.xml
-
Interface providing basic functionality for all JPhyloIO readers of XML formats.
- JPhyloIOXMLEventWriter - Interface in info.bioinfweb.jphyloio.formats.xml
-
Interface providing basic functionality for all JPhyloIO writers of XML formats.
- JPhyloIOXMLEventWriter - Interface in info.bioinfweb.jphyloio.formats.xml
-
Interface providing basic functionality for all JPhyloIO writers of XML formats.