public class AbstractNeXMLDataReceiverMixin extends Object implements NeXMLConstants
ATTR_ABOUT, ATTR_CELL_SET_LINKED_IDS, ATTR_CHAR_SET_LINKED_IDS, ATTR_CODON_POSITION, ATTR_CONTENT, ATTR_DATATYPE, ATTR_GENERATOR, ATTR_HREF, ATTR_ID, ATTR_LABEL, ATTR_LENGTH, ATTR_NODE_EDGE_SET_LINKED_EDGE_IDS, ATTR_NODE_EDGE_SET_LINKED_NODE_IDS, ATTR_NODE_EDGE_SET_LINKED_ROOTEDGE_IDS, ATTR_OTU_SET_LINKED_IDS, ATTR_OTUS, ATTR_PROPERTY, ATTR_REL, ATTR_ROOT, ATTR_SEQUENCE_SET_LINKED_IDS, ATTR_SINGLE_CHAR_LINK, ATTR_SINGLE_OTU_LINK, ATTR_SINGLE_STATE_LINK, ATTR_SOURCE, ATTR_STATE_SET_LINKED_IDS, ATTR_STATES, ATTR_SYMBOL, ATTR_TARGET, ATTR_TOKENS, ATTR_TREE_SET_LINKED_NETWORK_IDS, ATTR_TREE_SET_LINKED_TREE_IDS, ATTR_VERSION, ATTR_XSI_TYPE, DEFAULT_TOKEN_DEFINITION_SET_ID_PREFIX, NEXML_DEFAULT_NAMESPACE_PREFIX, NEXML_FORMAT_NAME, NEXML_NAMESPACE, NEXML_NAMESPACE_PREFIX, NEXML_PREDICATE_NAMESPACE, NEXML_VERSION, PREDICATE_CHAR_ATTR_CODON_POSITION, PREDICATE_CHAR_ATTR_TOKENS, PREDICATE_FORMAT, PREDICATE_MATRIX, PREDICATE_ORIGINAL_LABEL, PREDICATE_ORIGINAL_TOKEN_NAME, TAG_CELL, TAG_CHAR, TAG_CHARACTERS, TAG_EDGE, TAG_FORMAT, TAG_MATRIX, TAG_MEMBER, TAG_META, TAG_NETWORK, TAG_NODE, TAG_OTU, TAG_OTUS, TAG_POLYMORPHIC, TAG_ROOT, TAG_ROOTEDGE, TAG_ROW, TAG_SEQ, TAG_SET, TAG_STATE, TAG_STATES, TAG_TREE, TAG_TREES, TAG_UNCERTAIN, TYPE_CONTIN_CELLS, TYPE_CONTIN_SEQ, TYPE_DNA_CELLS, TYPE_DNA_SEQS, TYPE_FLOAT_NETWORK, TYPE_FLOAT_TREE, TYPE_INT_NETWORK, TYPE_INT_TREE, TYPE_LITERAL_META, TYPE_PROTEIN_CELLS, TYPE_PROTEIN_SEQS, TYPE_RESOURCE_META, TYPE_RESTRICTION_CELLS, TYPE_RESTRICTION_SEQS, TYPE_RNA_CELLS, TYPE_RNA_SEQS, TYPE_STANDARD_CELLS, TYPE_STANDARD_SEQ, UNDEFINED_OTU_ID_PREFIX, UNDEFINED_OTU_LABEL, UNDEFINED_OTUS_ID_PREFIX, UNDEFINED_OTUS_LABEL
Constructor and Description |
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AbstractNeXMLDataReceiverMixin() |
public AbstractNeXMLDataReceiverMixin()
public static void handleLiteralMeta(NeXMLWriterStreamDataProvider streamDataProvider, LiteralMetadataEvent event) throws XMLStreamException, JPhyloIOWriterException
public static void checkLiteralMeta(NeXMLWriterStreamDataProvider streamDataProvider, LiteralMetadataEvent event) throws XMLStreamException, JPhyloIOWriterException
public static void handleLiteralContentMeta(NeXMLWriterStreamDataProvider streamDataProvider, ReadWriteParameterMap parameters, LiteralMetadataContentEvent event) throws XMLStreamException, ClassCastException, IOException
public static void checkLiteralContentMeta(NeXMLWriterStreamDataProvider streamDataProvider, ReadWriteParameterMap parameters, LiteralMetadataContentEvent event) throws XMLStreamException
XMLStreamException
public static void handleResourceMeta(NeXMLWriterStreamDataProvider streamDataProvider, ResourceMetadataEvent event) throws ClassCastException, XMLStreamException, JPhyloIOWriterException
public static void checkResourceMeta(NeXMLWriterStreamDataProvider streamDataProvider, ResourceMetadataEvent event) throws IOException, XMLStreamException
IOException
XMLStreamException
public static void handleMetaEndEvent(NeXMLWriterStreamDataProvider streamDataProvider, JPhyloIOEvent event) throws IOException, XMLStreamException
IOException
XMLStreamException
public static void handleComment(NeXMLWriterStreamDataProvider streamDataProvider, CommentEvent event) throws ClassCastException, XMLStreamException
ClassCastException
XMLStreamException