- EdgeEvent - Class in info.bioinfweb.jphyloio.events
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Event indicating an edge in a tree or network.
- EdgeEvent - Class in info.bioinfweb.jphyloio.events
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Event indicating an edge in a tree or network.
- EdgeEvent(String, String, String, String, double) - Constructor for class info.bioinfweb.jphyloio.events.EdgeEvent
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Creates a new instance of this class that represents an internal edge or a root edge.
- EdgeEvent(String, String, String, double) - Constructor for class info.bioinfweb.jphyloio.events.EdgeEvent
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Creates a new instance of this class that represents a root edge.
- EdgeEvent(String, String, String, String, double) - Constructor for class info.bioinfweb.jphyloio.events.EdgeEvent
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Creates a new instance of this class that represents an internal edge or a root edge.
- EdgeEvent(String, String, String, double) - Constructor for class info.bioinfweb.jphyloio.events.EdgeEvent
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Creates a new instance of this class that represents a root edge.
- EDITED_LABEL_SEPARATOR - Static variable in class info.bioinfweb.jphyloio.AbstractEventWriter
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- EDITED_LABEL_SEPARATOR - Static variable in class info.bioinfweb.jphyloio.AbstractEventWriter
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- editLabel(String) - Method in class info.bioinfweb.jphyloio.AbstractEventWriter.NoEditUniqueLabelHandler
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- editLabel(String) - Method in class info.bioinfweb.jphyloio.AbstractEventWriter.NoEditUniqueLabelHandler
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- editLabel(String) - Method in interface info.bioinfweb.jphyloio.AbstractEventWriter.UniqueLabelHandler
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- editLabel(String) - Method in interface info.bioinfweb.jphyloio.AbstractEventWriter.UniqueLabelHandler
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- editSequenceOrNodeLabel(LinkedLabeledIDEvent, ReadWriteParameterMap, OTUListDataAdapter) - Method in class info.bioinfweb.jphyloio.AbstractSingleMatrixEventWriter
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- editSequenceOrNodeLabel(LinkedLabeledIDEvent, ReadWriteParameterMap, OTUListDataAdapter) - Method in class info.bioinfweb.jphyloio.AbstractSingleMatrixEventWriter
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- ELEMENT_SEPARATOR - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
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- ELEMENT_SEPARATOR - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
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- ELEMENT_SEPERATOR - Static variable in interface info.bioinfweb.jphyloio.formats.newick.NewickConstants
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- ELEMENT_SEPERATOR - Static variable in interface info.bioinfweb.jphyloio.formats.newick.NewickConstants
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- ElementDataAdapter<E extends JPhyloIOEvent> - Interface in info.bioinfweb.jphyloio.dataadapters
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Data adapters that model a data element identified by a certain start event should implement this interface.
- ElementDataAdapter<E extends JPhyloIOEvent> - Interface in info.bioinfweb.jphyloio.dataadapters
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Data adapters that model a data element identified by a certain start event should implement this interface.
- elementIndexByName(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.AbstractNexusSetReader
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Converts the Nexus name of a set element to its index.
- elementIndexByName(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.AbstractNexusSetReader
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Converts the Nexus name of a set element to its index.
- elementIndexByName(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.CharSetReader
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- elementIndexByName(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.CharSetReader
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- elementIndexByName(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.IDBasedSetsReader
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- elementIndexByName(String) - Method in class info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets.IDBasedSetsReader
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- EmptyAnnotatedDataAdapter<E extends JPhyloIOEvent> - Class in info.bioinfweb.jphyloio.dataadapters.implementations
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- EmptyAnnotatedDataAdapter<E extends JPhyloIOEvent> - Class in info.bioinfweb.jphyloio.dataadapters.implementations
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- EmptyAnnotatedDataAdapter() - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.EmptyAnnotatedDataAdapter
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- EmptyAnnotatedDataAdapter() - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.EmptyAnnotatedDataAdapter
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- EmptyDocumentDataAdapter - Class in info.bioinfweb.jphyloio.dataadapters.implementations
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- EmptyDocumentDataAdapter - Class in info.bioinfweb.jphyloio.dataadapters.implementations
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- EmptyDocumentDataAdapter() - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.EmptyDocumentDataAdapter
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- EmptyDocumentDataAdapter() - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.EmptyDocumentDataAdapter
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- EmptyObjectListDataAdapter<E extends JPhyloIOEvent> - Class in info.bioinfweb.jphyloio.dataadapters.implementations
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- EmptyObjectListDataAdapter<E extends JPhyloIOEvent> - Class in info.bioinfweb.jphyloio.dataadapters.implementations
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- EmptyObjectListDataAdapter() - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.EmptyObjectListDataAdapter
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- EmptyObjectListDataAdapter() - Constructor for class info.bioinfweb.jphyloio.dataadapters.implementations.EmptyObjectListDataAdapter
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- END_COMMAND - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
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- END_COMMAND - Static variable in interface info.bioinfweb.jphyloio.formats.nexus.NexusConstants
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- equals(Object) - Method in class info.bioinfweb.jphyloio.events.meta.URIOrStringIdentifier
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- equals(Object) - Method in class info.bioinfweb.jphyloio.events.meta.URIOrStringIdentifier
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- equals(Object) - Method in class info.bioinfweb.jphyloio.events.type.EventType
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- equals(Object) - Method in class info.bioinfweb.jphyloio.events.type.EventType
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- equals(Object) - Method in class info.bioinfweb.jphyloio.formats.xml.elementreaders.XMLElementReaderKey
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- equals(Object) - Method in class info.bioinfweb.jphyloio.formats.xml.elementreaders.XMLElementReaderKey
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- equals(Object) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractObjectTranslator
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- equals(Object) - Method in class info.bioinfweb.jphyloio.objecttranslation.implementations.AbstractObjectTranslator
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- EventContentType - Enum in info.bioinfweb.jphyloio.events.type
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- EventContentType - Enum in info.bioinfweb.jphyloio.events.type
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- EventForwarder - Class in info.bioinfweb.jphyloio.push
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- EventForwarder - Class in info.bioinfweb.jphyloio.push
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- EventForwarder() - Constructor for class info.bioinfweb.jphyloio.push.EventForwarder
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- EventForwarder() - Constructor for class info.bioinfweb.jphyloio.push.EventForwarder
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- eventsUpcoming() - Method in class info.bioinfweb.jphyloio.ReaderStreamDataProvider
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Checks whether events are waiting the event queue of the associated event reader.
- eventsUpcoming() - Method in class info.bioinfweb.jphyloio.ReaderStreamDataProvider
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Checks whether events are waiting the event queue of the associated event reader.
- EventTopologyType - Enum in info.bioinfweb.jphyloio.events.type
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Allows to determine between events that start and a end a data model structure (e.g.
- EventTopologyType - Enum in info.bioinfweb.jphyloio.events.type
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Allows to determine between events that start and a end a data model structure (e.g.
- EventType - Class in info.bioinfweb.jphyloio.events.type
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Event type object that combines the content and topology type of an event.
- EventType - Class in info.bioinfweb.jphyloio.events.type
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Event type object that combines the content and topology type of an event.
- EventType(EventContentType, EventTopologyType) - Constructor for class info.bioinfweb.jphyloio.events.type.EventType
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Creates a new instance of this class.
- EventType(EventContentType, EventTopologyType) - Constructor for class info.bioinfweb.jphyloio.events.type.EventType
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Creates a new instance of this class.
- extendSequence(MatrixDataAdapter, ReadWriteParameterMap, String, long, String, JPhyloIOEventReceiver) - Method in class info.bioinfweb.jphyloio.AbstractEventWriter
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- extendSequence(MatrixDataAdapter, ReadWriteParameterMap, String, long, String, JPhyloIOEventReceiver) - Method in class info.bioinfweb.jphyloio.AbstractEventWriter
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