public class PherogramUtils extends Object
PherogramProvider
and general tool methods to deal with pherogram data.Constructor and Description |
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PherogramUtils() |
Modifier and Type | Method and Description |
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static Set<String> |
createProbabilityLabelsList() |
static Set<Character> |
createTraceCurveNucleotideList() |
static int |
getFirstTracePosition(PherogramProvider provider,
int baseCallIndex)
Returns the index of the first trace value in the area of a trace curve belonging the base call with the specified index.
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public PherogramUtils()
public static int getFirstTracePosition(PherogramProvider provider, int baseCallIndex)
provider
- the provider of the pherogram databaseCallIndex
- the index of the base callpublic static Set<Character> createTraceCurveNucleotideList()
public static Set<String> createProbabilityLabelsList()