Package | Description |
---|---|
info.bioinfweb.libralign.alignmentarea.paintsettings |
Contains classes managing the painting of the contents of
AlignmentArea s. |
info.bioinfweb.libralign.alignmentarea.tokenpainter |
Contains implementations of
TokenPainter |
info.bioinfweb.libralign.dataarea.implementations.pherogram |
Contains
PherogramArea and other classes used in its
implementation. |
Modifier and Type | Method and Description |
---|---|
TokenPainter |
TokenPainterList.get(int index)
Returns the painter at the specified index.
|
TokenPainter |
TokenPainterList.getDefaultTokenPainter()
Returns the default token painter that is used to paint tokens from the alignment model if no according
painter is defined in the list.
|
TokenPainter |
TokenPainterReplacedEvent.getNewPainter()
Returns the painter that replaced the previous one
|
TokenPainter |
TokenPainterReplacedEvent.getPreviousPainter()
Returns the painter that has been replaced.
|
TokenPainter |
TokenPainterList.painterByColumn(int columnIndex)
Returns the according painter to the specified column index.
|
TokenPainter |
TokenPainterList.set(int index,
TokenPainter painter)
Replaces the painter at the specified position in this list with the specified new painter.
|
Modifier and Type | Method and Description |
---|---|
Iterator<TokenPainter> |
TokenPainterList.iterator()
Returns an unmodifiable iterator over all painter of this list.
|
Modifier and Type | Method and Description |
---|---|
protected void |
PaintSettings.fireTokenPainterReplaced(TokenPainter previousPainter,
TokenPainter newPainter,
int index) |
int |
TokenPainterList.indexOf(TokenPainter painter)
Returns the first index of the specified token painter in this list.
|
TokenPainter |
TokenPainterList.set(int index,
TokenPainter painter)
Replaces the painter at the specified position in this list with the specified new painter.
|
Constructor and Description |
---|
TokenPainterReplacedEvent(PaintSettings source,
TokenPainter previousPainter,
TokenPainter newPainter,
int index)
Creates a new instance of this class.
|
Modifier and Type | Class and Description |
---|---|
class |
AbstractBioPolymerTokenPainter
Implements shared functionality for painting nucleotide and amino acid tokens including
their ambiguity codes.
|
class |
AbstractTokenPainter
Implements shared functionality between implementations of
TokenPainter . |
class |
AminoAcidTokenPainter
Token painter that paints amino acids.
|
class |
NucleotideTokenPainter
Token painter that paints nucleotides.
|
class |
SingleColorTokenPainter
Token painter that paints the string representation of a token centered into a rectangle filled with a
specified background color.
|
Modifier and Type | Method and Description |
---|---|
TokenPainter |
PherogramArea.getAccordingTokenPainter() |