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Package Hierarchies:
info.bioinfweb.libralign.actions
,
info.bioinfweb.libralign.alignmentarea
,
info.bioinfweb.libralign.alignmentarea.content
,
info.bioinfweb.libralign.alignmentarea.label
,
info.bioinfweb.libralign.alignmentarea.order
,
info.bioinfweb.libralign.alignmentarea.paintsettings
,
info.bioinfweb.libralign.alignmentarea.rowsarea
,
info.bioinfweb.libralign.alignmentarea.selection
,
info.bioinfweb.libralign.alignmentarea.tokenpainter
,
info.bioinfweb.libralign.dataarea
,
info.bioinfweb.libralign.dataarea.implementations
,
info.bioinfweb.libralign.dataarea.implementations.charset
,
info.bioinfweb.libralign.dataarea.implementations.pherogram
,
info.bioinfweb.libralign.dataarea.implementations.sequenceindex
,
info.bioinfweb.libralign.editsettings
,
info.bioinfweb.libralign.model
,
info.bioinfweb.libralign.model.adapters
,
info.bioinfweb.libralign.model.concatenated
,
info.bioinfweb.libralign.model.data
,
info.bioinfweb.libralign.model.events
,
info.bioinfweb.libralign.model.exception
,
info.bioinfweb.libralign.model.factory
,
info.bioinfweb.libralign.model.factory.biojava
,
info.bioinfweb.libralign.model.factory.continuous
,
info.bioinfweb.libralign.model.implementations
,
info.bioinfweb.libralign.model.implementations.decorate
,
info.bioinfweb.libralign.model.implementations.swingundo
,
info.bioinfweb.libralign.model.implementations.swingundo.edits
,
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence
,
info.bioinfweb.libralign.model.implementations.swingundo.edits.token
,
info.bioinfweb.libralign.model.io
,
info.bioinfweb.libralign.model.tokenset
,
info.bioinfweb.libralign.model.tokenset.continuous
,
info.bioinfweb.libralign.model.utils
,
info.bioinfweb.libralign.multiplealignments
,
info.bioinfweb.libralign.pherogram
,
info.bioinfweb.libralign.pherogram.distortion
,
info.bioinfweb.libralign.pherogram.model
,
info.bioinfweb.libralign.pherogram.provider
,
info.bioinfweb.libralign.pherogram.view
Class Hierarchy
java.lang.
Object
info.bioinfweb.libralign.model.implementations.
AbstractAlignmentModel
<T> (implements info.bioinfweb.libralign.model.
AlignmentModel
<T>)
info.bioinfweb.libralign.model.implementations.decorate.
AbstractAlignmentModelDecorator
<T,U> (implements info.bioinfweb.libralign.model.
AlignmentModelView
<T,U>)
info.bioinfweb.libralign.model.implementations.decorate.
AbstractTokenReplacementAlignmentModelDecorator
<T,U>
info.bioinfweb.libralign.model.implementations.decorate.
DNAAlignmentModelDecorator
<T,U>
info.bioinfweb.libralign.model.implementations.decorate.
RNAAlignmentModelDecorator
<T,U>
info.bioinfweb.libralign.model.implementations.
AbstractUndecoratedAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
AbstractMapBasedAlignmentModel
<S,T>
info.bioinfweb.libralign.model.implementations.
AbstractListAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
ArrayListAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
PackedAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
AbstractUnmodifyableAlignmentModel
<S,T> (implements info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T>)
info.bioinfweb.libralign.model.implementations.
BioJava3SequenceAlignmentModel
<S,C> (implements info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T>)
info.bioinfweb.libralign.model.implementations.
CharSequenceAlignmentModel
(implements info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T>)
info.bioinfweb.libralign.model.adapters.
AbstractAlignmentModelAdapter
<T> (implements info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>)
info.bioinfweb.libralign.model.adapters.
AbstractSingleSequenceDataAdapter
<T> (implements info.bioinfweb.libralign.model.adapters.
SingleSequenceDataAdapter
<T>)
info.bioinfweb.libralign.model.adapters.
SingleBioJava3SequenceAdapter
<T,C> (implements org.biojava3.core.sequence.template.Sequence<C>)
info.bioinfweb.libralign.model.adapters.
SingleCharSequenceAdapter
<T> (implements java.lang.
CharSequence
, info.bioinfweb.libralign.model.adapters.
SingleSequenceDataAdapter
<T>)
info.bioinfweb.libralign.model.adapters.
BioJava3SequenceAdapter
<T,C> (implements info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T>)
info.bioinfweb.libralign.model.adapters.
CharSequenceAdapter
<T> (implements info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T>)
info.bioinfweb.libralign.model.adapters.
StringAdapter
<T>
info.bioinfweb.libralign.model.factory.
AbstractAlignmentModelFactory
<T> (implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.model.factory.
BioPolymerCharAlignmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.model.factory.continuous.
DoubleAlignmentModelFactory
info.bioinfweb.libralign.model.factory.continuous.
FloatAlignmentModelFactory
java.util.
AbstractCollection
<E> (implements java.util.
Collection
<E>)
java.util.
AbstractSet
<E> (implements java.util.
Set
<E>)
info.bioinfweb.libralign.model.tokenset.
BioJava3TokenSet
<C> (implements info.bioinfweb.libralign.model.tokenset.
TokenSet
<T>)
java.util.
HashSet
<E> (implements java.lang.
Cloneable
, java.io.
Serializable
, java.util.
Set
<E>)
info.bioinfweb.libralign.model.tokenset.
AbstractTokenSet
<T> (implements info.bioinfweb.libralign.model.tokenset.
TokenSet
<T>)
info.bioinfweb.libralign.model.tokenset.
CharacterTokenSet
info.bioinfweb.libralign.model.tokenset.
DefaultTokenSet
<T>
java.util.
TreeSet
<E> (implements java.lang.
Cloneable
, java.util.
NavigableSet
<E>, java.io.
Serializable
)
info.bioinfweb.commons.collections.
NonOverlappingIntervalList
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSet
info.bioinfweb.libralign.model.tokenset.continuous.
AbstractContinuousSet
<T> (implements info.bioinfweb.libralign.model.tokenset.
TokenSet
<T>)
info.bioinfweb.libralign.model.tokenset.continuous.
DoubleTokenSet
info.bioinfweb.libralign.model.tokenset.continuous.
FloatTokenSet
info.bioinfweb.libralign.model.io.
AbstractDataModelEventReader
<M> (implements info.bioinfweb.libralign.model.io.
DataModelEventReader
<M>)
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetEventReader
info.bioinfweb.commons.swing.
AbstractDocumentEdit
(implements javax.swing.undo.
UndoableEdit
)
info.bioinfweb.libralign.model.implementations.swingundo.edits.
LibrAlignSwingAlignmentEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingSequenceEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingConcreteAddSequenceEdit
<T> (implements info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingAddSequenceEdit
)
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingRemoveSequenceEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingRenameSequenceEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingTokenEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingInsertRemoveTokensEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingInsertTokensEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingRemoveTokensEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingSetTokensEdit
<T>
org.apache.commons.collections4.map.
AbstractIterableMap
<K,V> (implements org.apache.commons.collections4.
IterableMap
<K,V>)
org.apache.commons.collections4.map.
AbstractMapDecorator
<K,V>
org.apache.commons.collections4.map.
ListOrderedMap
<K,V> (implements org.apache.commons.collections4.
OrderedMap
<K,V>, java.io.
Serializable
)
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetDataModel
(implements info.bioinfweb.libralign.model.data.
DataModel
)
java.util.
AbstractMap
<K,V> (implements java.util.
Map
<K,V>)
java.util.
TreeMap
<K,V> (implements java.lang.
Cloneable
, java.util.
NavigableMap
<K,V>, java.io.
Serializable
)
info.bioinfweb.commons.collections.
ParameterMap
info.bioinfweb.libralign.model.factory.
NewAlignmentModelParameterMap
info.bioinfweb.libralign.alignmentarea.content.
SequenceAreaMap
(implements info.bioinfweb.libralign.alignmentarea.selection.
SelectionListener
)
info.bioinfweb.libralign.model.implementations.
AbstractSequenceIDIterator
<P> (implements java.util.
Iterator
<E>)
info.bioinfweb.libralign.alignmentarea.tokenpainter.
AbstractTokenPainter
(implements info.bioinfweb.libralign.alignmentarea.tokenpainter.
TokenPainter
)
info.bioinfweb.libralign.alignmentarea.tokenpainter.
SingleColorTokenPainter
(implements info.bioinfweb.libralign.alignmentarea.tokenpainter.
TokenPainter
)
info.bioinfweb.libralign.alignmentarea.tokenpainter.
AbstractBioPolymerTokenPainter
info.bioinfweb.libralign.alignmentarea.tokenpainter.
AminoAcidTokenPainter
info.bioinfweb.libralign.alignmentarea.tokenpainter.
NucleotideTokenPainter
info.bioinfweb.libralign.actions.
AlignmentActionProvider
<T>
info.bioinfweb.libralign.alignmentarea.content.
AlignmentContentAreaTools
info.bioinfweb.libralign.alignmentarea.selection.
AlignmentCursor
info.bioinfweb.libralign.model.io.
AlignmentDataReader
info.bioinfweb.libralign.model.io.
AlignmentModelEventReader
(implements info.bioinfweb.jphyloio.push.JPhyloIOEventListener)
info.bioinfweb.libralign.model.utils.
AlignmentModelUtils
info.bioinfweb.libralign.alignmentarea.content.
AlignmentSubAreaIterator
<C> (implements java.util.
Iterator
<E>)
info.bioinfweb.libralign.model.factory.biojava.
BioJava3AminoAcidAligmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.model.factory.biojava.
BioJava3NucleotideAlignmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.pherogram.provider.
BioJavaPherogramProvider
(implements info.bioinfweb.libralign.pherogram.provider.
PherogramProvider
)
info.bioinfweb.libralign.model.utils.
CharSequenceTokenScanner
<T>
java.awt.
Component
(implements java.awt.image.
ImageObserver
, java.awt.
MenuContainer
, java.io.
Serializable
)
java.awt.
Container
javax.swing.
JComponent
(implements java.io.
Serializable
)
javax.swing.
JPanel
(implements javax.accessibility.
Accessible
)
info.bioinfweb.tic.toolkit.
AbstractSwingComponent
(implements info.bioinfweb.tic.toolkit.
ToolkitComponent
)
info.bioinfweb.libralign.alignmentarea.rowsarea.
SwingAlignmentRowsArea
<C> (implements javax.swing.
Scrollable
, info.bioinfweb.libralign.alignmentarea.rowsarea.
ToolkitSpecificAlignmentRowsArea
<C>)
info.bioinfweb.libralign.alignmentarea.content.
SwingAlignmentContentArea
(implements javax.swing.
Scrollable
, info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
)
info.bioinfweb.libralign.alignmentarea.label.
SwingAlignmentLabelArea
(implements info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
)
info.bioinfweb.libralign.multiplealignments.
SwingMultipleAlignmentsContainer
(implements info.bioinfweb.libralign.multiplealignments.
ToolkitSpecificMultipleAlignmentsContainer
)
javax.swing.
JScrollPane
(implements javax.accessibility.
Accessible
, javax.swing.
ScrollPaneConstants
)
info.bioinfweb.libralign.alignmentarea.
SwingAlignmentArea
(implements info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
)
info.bioinfweb.libralign.pherogram.view.
SwingPhergramView
(implements info.bioinfweb.libralign.pherogram.view.
ToolkitIndependentPhergramView
)
info.bioinfweb.libralign.model.tokenset.continuous.
ContinuousToken
<V> (implements java.lang.
Comparable
<T>)
info.bioinfweb.libralign.dataarea.
DataAreaChangeEventList
(implements java.util.
List
<E>)
info.bioinfweb.libralign.dataarea.
DataAreaList
info.bioinfweb.libralign.dataarea.
DataAreaLocation
info.bioinfweb.libralign.dataarea.
DataAreaModel
info.bioinfweb.libralign.dataarea.
DataAreaSequenceChangeListener
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
)
info.bioinfweb.libralign.dataarea.
DataAreaVisibleIterator
(implements java.util.
Iterator
<E>)
info.bioinfweb.libralign.model.io.
DataModelReadInfo
<M>
info.bioinfweb.libralign.model.utils.
DegapedIndexCalculator
<T>
info.bioinfweb.libralign.editsettings.
EditSettings
info.bioinfweb.jphyloio.dataadapters.implementations.EmptyAnnotatedDataAdapter<E> (implements info.bioinfweb.jphyloio.dataadapters.AnnotatedDataAdapter)
info.bioinfweb.jphyloio.dataadapters.implementations.NoCharDefsNoSetsMatrixDataAdapter (implements info.bioinfweb.jphyloio.dataadapters.MatrixDataAdapter)
info.bioinfweb.libralign.model.io.
AlignmentModelDataAdapter
<T> (implements info.bioinfweb.jphyloio.dataadapters.MatrixDataAdapter)
java.util.
EventObject
(implements java.io.
Serializable
)
info.bioinfweb.libralign.model.events.
AlignmentModelChangeEvent
<T>
info.bioinfweb.libralign.model.events.
SequenceChangeEvent
<T>
info.bioinfweb.libralign.model.events.
TokenChangeEvent
<T>
info.bioinfweb.libralign.model.events.
SequenceRenamedEvent
<T>
javax.swing.event.
ChangeEvent
info.bioinfweb.libralign.pherogram.model.
PherogramModelChangeEvent
info.bioinfweb.libralign.pherogram.model.
PherogramCutPositionChangeEvent
info.bioinfweb.libralign.pherogram.model.
PherogramFirstSeqPosChangeEvent
info.bioinfweb.libralign.pherogram.model.
PherogramProviderChangeEvent
info.bioinfweb.libralign.dataarea.
DataAreaChangeEvent
info.bioinfweb.libralign.editsettings.
EditSettingsChangeEvent
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettingsEvent
info.bioinfweb.libralign.alignmentarea.paintsettings.
TokenPainterReplacedEvent
info.bioinfweb.libralign.alignmentarea.paintsettings.
ZoomChangeEvent
info.bioinfweb.libralign.alignmentarea.selection.
SelectionChangeEvent
info.bioinfweb.libralign.pherogram.distortion.
GapPattern
info.bioinfweb.commons.collections.
ListDecorator
<E> (implements java.util.
List
<E>)
info.bioinfweb.commons.collections.observable.
ObservableList
<E>
info.bioinfweb.libralign.multiplealignments.
AlignmentAreaList
info.bioinfweb.libralign.multiplealignments.
MultipleAlignmentsEventForwarder
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
, info.bioinfweb.libralign.dataarea.
DataAreaModelListener
)
info.bioinfweb.libralign.model.data.
NoArgDataModelFactory
<M> (implements info.bioinfweb.libralign.model.data.
DataModelFactory
<M>)
info.bioinfweb.libralign.alignmentarea.selection.
OneDimensionalSelection
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettings
info.bioinfweb.libralign.pherogram.model.
PherogramAlignmentRelation
info.bioinfweb.libralign.pherogram.model.
PherogramComponentModel
info.bioinfweb.libralign.pherogram.model.
PherogramAreaModel
(implements info.bioinfweb.libralign.model.data.
DataModel
)
info.bioinfweb.libralign.pherogram.
PherogramFormats
info.bioinfweb.libralign.pherogram.
PherogramPainter
info.bioinfweb.libralign.pherogram.
PherogramUtils
info.bioinfweb.libralign.pherogram.provider.
ReverseComplementPherogramProvider
(implements info.bioinfweb.libralign.pherogram.provider.
PherogramProvider
)
info.bioinfweb.libralign.pherogram.distortion.
ScaledPherogramDistortion
(implements info.bioinfweb.libralign.pherogram.distortion.
PherogramDistortion
)
info.bioinfweb.libralign.alignmentarea.selection.
SelectionModel
info.bioinfweb.libralign.alignmentarea.selection.
SelectionSynchronizer
info.bioinfweb.libralign.model.implementations.
SequenceIDManager
info.bioinfweb.libralign.dataarea.implementations.sequenceindex.
SequenceIndexModel
(implements info.bioinfweb.libralign.model.data.
DataModel
)
info.bioinfweb.libralign.alignmentarea.order.
SequenceOrder
info.bioinfweb.libralign.pherogram.model.
ShiftChange
info.bioinfweb.libralign.model.factory.
StringAlignmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.model.implementations.swingundo.
SwingUndoAlignmentModel
<T> (implements info.bioinfweb.libralign.model.
AlignmentModel
<T>, info.bioinfweb.libralign.model.
AlignmentModelView
<T,U>)
info.bioinfweb.libralign.alignmentarea.
SWTScrolledCompositeResizeListener
(implements org.eclipse.swt.events.ControlListener)
java.lang.
Throwable
(implements java.io.
Serializable
)
java.lang.
Exception
java.lang.
RuntimeException
info.bioinfweb.libralign.model.exception.
AlignmentModelException
info.bioinfweb.libralign.model.exception.
AlignmentSourceNotWritableException
info.bioinfweb.libralign.model.exception.
DuplicateSequenceNameException
info.bioinfweb.libralign.model.exception.
InvalidTokenException
info.bioinfweb.libralign.model.exception.
SequenceNotFoundException
info.bioinfweb.libralign.model.exception.
InvalidTokenRepresentationException
info.bioinfweb.libralign.model.adapters.
InvalidUnderlyingTokenException
info.bioinfweb.tic.
TICComponent
info.bioinfweb.libralign.alignmentarea.
AlignmentArea
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
, info.bioinfweb.libralign.dataarea.
DataAreaModelListener
)
info.bioinfweb.libralign.alignmentarea.content.
AlignmentContentArea
info.bioinfweb.libralign.alignmentarea.label.
AlignmentLabelArea
info.bioinfweb.libralign.alignmentarea.label.
AlignmentLabelSubArea
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetNameArea
info.bioinfweb.libralign.alignmentarea.label.
DefaultLabelSubArea
info.bioinfweb.libralign.alignmentarea.label.
TextLabelArea
info.bioinfweb.libralign.alignmentarea.label.
SequenceLabelArea
info.bioinfweb.libralign.alignmentarea.content.
AlignmentSubArea
info.bioinfweb.libralign.dataarea.
DataArea
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
)
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetArea
info.bioinfweb.libralign.dataarea.implementations.
ConsensusSequenceArea
info.bioinfweb.libralign.dataarea.implementations.pherogram.
PherogramArea
(implements info.bioinfweb.libralign.pherogram.
PherogramComponent
)
info.bioinfweb.libralign.dataarea.implementations.sequenceindex.
SequenceIndexArea
info.bioinfweb.libralign.alignmentarea.content.
SequenceArea
info.bioinfweb.libralign.multiplealignments.
MultipleAlignmentsContainer
info.bioinfweb.libralign.pherogram.view.
PherogramHeadingView
info.bioinfweb.libralign.pherogram.view.
PherogramTraceCurveView
(implements info.bioinfweb.libralign.pherogram.
PherogramComponent
)
info.bioinfweb.libralign.pherogram.view.
PherogramView
info.bioinfweb.tic.input.
TICMouseAdapter
(implements info.bioinfweb.tic.input.
TICMouseListener
)
info.bioinfweb.libralign.alignmentarea.content.
CursorSelectionInputListener
(implements info.bioinfweb.tic.input.
TICKeyListener
, info.bioinfweb.tic.input.
TICMouseListener
)
info.bioinfweb.libralign.model.factory.
TokenDefinition
info.bioinfweb.libralign.alignmentarea.paintsettings.
TokenPainterList
(implements java.lang.
Iterable
<T>)
info.bioinfweb.libralign.model.io.
TokenSetAdapter
<T> (implements info.bioinfweb.jphyloio.dataadapters.ObjectListDataAdapter<E>)
info.bioinfweb.libralign.model.tokenset.
TokenSetTools
info.bioinfweb.libralign.pherogram.distortion.
UnscaledPherogramDistortion
(implements info.bioinfweb.libralign.pherogram.distortion.
PherogramDistortion
)
org.eclipse.swt.widgets.Widget
org.eclipse.swt.widgets.Control (implements org.eclipse.swt.graphics.Drawable)
org.eclipse.swt.widgets.Scrollable
org.eclipse.swt.widgets.Composite
info.bioinfweb.tic.toolkit.
AbstractSWTComposite
(implements info.bioinfweb.tic.toolkit.
ToolkitComponent
)
info.bioinfweb.libralign.alignmentarea.
SWTAlignmentArea
(implements info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
)
info.bioinfweb.libralign.alignmentarea.rowsarea.
SWTAlignmentRowsArea
<C> (implements info.bioinfweb.libralign.alignmentarea.rowsarea.
ToolkitSpecificAlignmentRowsArea
<C>)
info.bioinfweb.libralign.alignmentarea.content.
SWTAlignmentContentArea
(implements info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
)
info.bioinfweb.libralign.alignmentarea.label.
SWTAlignmentLabelArea
(implements info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
)
info.bioinfweb.libralign.multiplealignments.
SWTMultipleAlignmentsContainer
(implements info.bioinfweb.libralign.multiplealignments.
ToolkitSpecificMultipleAlignmentsContainer
)
info.bioinfweb.libralign.pherogram.view.
SWTPhergramView
(implements info.bioinfweb.libralign.pherogram.view.
ToolkitIndependentPhergramView
)
Interface Hierarchy
info.bioinfweb.libralign.model.
AlignmentModel
<T>
info.bioinfweb.libralign.model.
AlignmentModelView
<T,U> (also extends info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>)
info.bioinfweb.libralign.model.concatenated.
ConcatenatedAlignmentModel
info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T> (also extends info.bioinfweb.libralign.model.
SequenceAccess
<S>)
info.bioinfweb.libralign.model.
AlignmentModelChangeListener
info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>
info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>
info.bioinfweb.libralign.model.
AlignmentModelView
<T,U> (also extends info.bioinfweb.libralign.model.
AlignmentModel
<T>)
info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T> (also extends info.bioinfweb.libralign.model.
SequenceAccess
<S>)
info.bioinfweb.libralign.model.adapters.
SingleSequenceDataAdapter
<T>
java.lang.
Cloneable
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.util.
Set
<E>)
info.bioinfweb.libralign.model.data.
DataModel
info.bioinfweb.libralign.pherogram.provider.
PherogramProvider
info.bioinfweb.libralign.model.data.
DataModelFactory
<M>
java.util.
EventListener
info.bioinfweb.libralign.dataarea.
DataAreaModelListener
info.bioinfweb.libralign.editsettings.
EditSettingsListener
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettingsListener
java.beans.
PropertyChangeListener
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettingsListener
info.bioinfweb.libralign.alignmentarea.selection.
SelectionListener
java.lang.
Iterable
<T>
java.util.
Collection
<E>
java.util.
Set
<E>
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.
Cloneable
)
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.
Cloneable
, java.util.
Set
<E>)
java.util.
Set
<E>
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.
Cloneable
)
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.
Cloneable
, java.util.
Set
<E>)
info.bioinfweb.jphyloio.push.JPhyloIOEventListener
info.bioinfweb.libralign.model.io.
DataModelEventReader
<M>
info.bioinfweb.libralign.pherogram.
PherogramComponent
info.bioinfweb.libralign.pherogram.model.
PherogramComponentModelListener
info.bioinfweb.libralign.pherogram.distortion.
PherogramDistortion
info.bioinfweb.libralign.model.
SequenceAccess
<S>
info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T> (also extends info.bioinfweb.libralign.model.
AlignmentModel
<T>)
info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T> (also extends info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>)
info.bioinfweb.libralign.model.implementations.swingundo.
SwingEditFactory
<T>
info.bioinfweb.libralign.alignmentarea.tokenpainter.
TokenPainter
info.bioinfweb.tic.toolkit.
ToolkitComponent
info.bioinfweb.libralign.pherogram.view.
ToolkitIndependentPhergramView
info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
info.bioinfweb.libralign.alignmentarea.rowsarea.
ToolkitSpecificAlignmentRowsArea
<C>
info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
info.bioinfweb.libralign.multiplealignments.
ToolkitSpecificMultipleAlignmentsContainer
javax.swing.undo.
UndoableEdit
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingAddSequenceEdit
Enum Hierarchy
java.lang.
Object
java.lang.
Enum
<E> (implements java.lang.
Comparable
<T>, java.io.
Serializable
)
info.bioinfweb.libralign.alignmentarea.order.
SequenceOrderType
info.bioinfweb.libralign.alignmentarea.selection.
SelectionDimension
info.bioinfweb.libralign.alignmentarea.selection.
SelectionType
info.bioinfweb.libralign.dataarea.
DataAreaListType
info.bioinfweb.libralign.editsettings.
WorkingMode
info.bioinfweb.libralign.model.
AlignmentModelWriteType
info.bioinfweb.libralign.pherogram.
PherogramFormats.QualityOutputType
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