Package | Description |
---|---|
info.bioinfweb.libralign.dataarea |
Contains
DataArea from which all data areas used in LibrAlign
must be inherited as well as related classes and a set of general data area implementations provided with
LibrAlign which are located in the subpackage implementations . |
info.bioinfweb.libralign.dataarea.implementations |
Contains classes that implement a concrete data area.
|
info.bioinfweb.libralign.dataarea.implementations.charset |
Contains data area related classes to display character sets of an alignment.
|
info.bioinfweb.libralign.dataarea.implementations.pherogram |
Contains
PherogramArea and other classes used in its
implementation. |
info.bioinfweb.libralign.dataarea.implementations.sequenceindex |
Modifier and Type | Method and Description |
---|---|
DataAreaListType |
DataAreaLocation.getListType() |
static DataAreaListType |
DataAreaListType.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
|
static DataAreaListType[] |
DataAreaListType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
abstract java.util.Set<DataAreaListType> |
DataArea.validLocations()
The result should enumerate all valid locations where the implementing data area is allowed to be located.
|
Modifier and Type | Method and Description |
---|---|
void |
DataAreaLocation.setListType(DataAreaListType listType)
Changes the list type.
|
Constructor and Description |
---|
DataAreaList(DataAreasModel owner,
DataAreaListType listType)
Creates a new instance of this class for lists containing data areas displayed above
or underneath the alignment.
|
DataAreaLocation(DataAreaListType listType)
Creates a new instance of this class specifying locations above or underneath the alignment.
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<DataAreaListType> |
ConsensusSequenceArea.validLocations() |
Modifier and Type | Method and Description |
---|---|
java.util.Set<DataAreaListType> |
CharSetArea.validLocations()
This data area is allowed to attached at the top and bottom of an alignment area as well as to each sequence.
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<DataAreaListType> |
PherogramArea.validLocations() |
Modifier and Type | Method and Description |
---|---|
java.util.Set<DataAreaListType> |
SequenceIndexArea.validLocations() |