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		Date	Author	Revision	Message
		4/26/19 6:14 PM	BenStoever	1053	Comment in pom.xml of I/O module edited.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.io/pom.xml
		12/20/18 12:12 PM	LaraKoesters	1052	When obtaining the currentSequenceID, not only the label but also the sequence ID provided by the file should be handed over to addSequence.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.io/src/info/bioinfweb/libralign/model/io/AlignmentModelEventReader.java
		12/20/18 12:07 PM	LaraKoesters	1051	SwingUndoAlignmentModel now has a getter and a setter for the ID.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/model/implementations/swingundo/SwingUndoAlignmentModel.java
		12/8/18 12:01 AM	BenStoever	1050	PherogramHeadingView and PherogramTraceCurveView may now be painted without a model.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/pherogram/view/PherogramHeadingView.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/pherogram/view/PherogramTraceCurveView.java
		12/1/18 4:37 PM	BenStoever	1049	PherogramArea now allows to use a shared PherogramFormats instance. AlignmentArea and MultipleAlignmentsContainer now allow to use a shared EditSettings instance.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/alignmentarea/AlignmentArea.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/dataarea/implementations/pherogram/PherogramArea.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/multiplealignments/MultipleAlignmentsContainer.java
		12/1/18 4:22 PM	BenStoever	1048	Owner property removed from PherogramFormats.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/dataarea/implementations/pherogram/PherogramArea.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/pherogram/PherogramFormats.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/pherogram/PherogramPainter.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/pherogram/view/PherogramHeadingView.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/pherogram/view/PherogramTraceCurveView.java
		11/26/18 11:00 AM	SarahvanGroen	1047	ReverseComplementAction finished.	[more]
		Action Path Modified /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/ReverseComplementAction.java
		11/25/18 7:49 PM	SarahvanGroen	1046	ReverseComplementAction changed.	[more]
		Action Path Modified /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/Application.java Modified /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/ReverseComplementAction.java
		11/23/18 2:42 PM	SarahvanGroen	1045	CutRightAction, CutLeftAction now work properly.	[more]
		Action Path Modified /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/CutLeftAction.java Modified /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/CutRightAction.java
		11/23/18 2:22 PM	SarahvanGroen	1044	SwitchInsertOverwriteAction added. ReverseComplementAction, CutRightAction, CutLeftAction added, but contain some errors.	[more]
		Action Path Modified /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/Application.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/CutLeftAction.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/CutRightAction.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/ReverseComplementAction.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/SwitchInsertOverwriteAction.java
		11/22/18 5:13 PM	SarahvanGroen	1043	SwitchLeftRightInsertionAction, ShowHideBasecalllinesAction, DisplayProbabilityValuesAction added.	[more]
		Action Path Modified /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/Application.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/DisplayProbabilityValuesAction.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/ShowHideBasecalllinesAction.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/SwitchLeftRightInsertionAction.java
		11/22/18 4:36 PM	SarahvanGroen	1042	The basic pherogram demo has been used as basic structure for the advanced pherogram demo. The functionality to display the quality scores in the pherogram has been added.	[more]
		Action Path Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/data Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/data/Pherogram.scf Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/Application.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/AbstractAdvancedPherogramAction.java Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram/actions/DisplayQualityScoresAction.java
		11/22/18 3:19 PM	SarahvanGroen	1041	Removed unused imports.	[more]
		Action Path Modified /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/info/bioinfweb/libralign/demo/basicpherogram/Application.java
		11/22/18 3:17 PM	SarahvanGroen	1040	Advanced pherogram demo project created.	[more]
		Action Path Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/.classpath Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/.project Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/.settings Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/.settings/org.eclipse.jdt.core.prefs Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/APACHE-LICENSE.txt Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/GPL.txt Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/LGPL.txt Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/NOTICE.txt Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram/src/info/bioinfweb/libralign/demo/advancedpherogram
		11/22/18 3:16 PM	SarahvanGroen	1039	Share project "info.bioinfweb.libralign.demo.advancedpherogram" into "https://secure.bioinfweb.info/Code/svn/LibrAlign"	[more]
		Action Path Added /trunk/demo/info.bioinfweb.libralign.demo.advancedpherogram
		11/22/18 2:41 PM	SarahvanGroen	1038	Basic pherogram demo application implemented.	[more]
		Action Path Modified /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/.classpath Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/data Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/data/Pherogram.scf Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/info/bioinfweb/libralign/demo/basicpherogram/Application.java
		11/22/18 2:40 PM	SarahvanGroen	1037	TODO added.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/pherogram/provider/PherogramProvider.java
		11/22/18 12:43 PM	SarahvanGroen	1036	Basic pherogram demo project created.	[more]
		Action Path Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/.classpath Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/.project Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/.settings Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/.settings/org.eclipse.jdt.core.prefs Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/APACHE-LICENSE.txt Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/GPL.txt Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/LGPL.txt Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/NOTICE.txt Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/info Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/info/bioinfweb Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/info/bioinfweb/libralign Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/info/bioinfweb/libralign/demo Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram/src/info/bioinfweb/libralign/demo/basicpherogram
		11/22/18 12:43 PM	SarahvanGroen	1035	Share project "info.bioinfweb.libralign.demo.basicpherogram" into "https://secure.bioinfweb.info/Code/svn/LibrAlign"	[more]
		Action Path Added /trunk/demo/info.bioinfweb.libralign.demo.basicpherogram
		7/22/18 5:43 PM	BenStoever	1034	GitHub ReadMe updated.	[more]
		Action Path Modified /trunk/README.md
		5/25/18 9:37 AM	BenStoever	1033	Legal information added to GitHub ReadMe.	[more]
		Action Path Modified /trunk/README.md
		4/18/18 5:48 PM	BenStoever	1032	Tag for release 0.9.0 created.	[more]
		Action Path Added /tags/Release_0.9.0 (Copy from /trunk @ 1031)
		3/8/18 12:12 PM	BenStoever	1031	RandomAccessIndexTranslatorTest extended.	[more]
		Action Path Modified /trunk/test/src/info/bioinfweb/libralign/model/utils/indextranslation/RandomAccessIndexTranslatorTest.java
		3/8/18 12:06 PM	BenStoever	1030	RandomAccessIndexTranslator now supports handling indices outside of the alignment.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/model/utils/indextranslation/RandomAccessIndexTranslator.java
		3/6/18 7:49 PM	BenStoever	1029	JavaDoc extended.	[more]
		Action Path Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/alignmentarea/tokenpainter/AbstractTokenPainter.java Modified /trunk/main/info.bioinfweb.libralign.core/src/info/bioinfweb/libralign/alignmentarea/tokenpainter/TokenPainter.java
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