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		Date	Author	Revision	Message
		5/29/17 11:06 AM	BenStoever	749	Branch to develop support for extended metadata model created.	[more]
		Action Path Added /branches/ExtendedMetadataModel (Copy from /trunk @ 748)
		1/9/17 5:15 PM	BenStoever	748	Tag for release 2.13.0 created.	[more]
		Action Path Added /tags/2.13.0 (Copy from /trunk @ 747)
		1/9/17 3:00 PM	BenStoever	747	bioinfweb.commons dependencies updated. Version information updated.	[more]
		Action Path Modified /trunk/main/MANIFEST.MF Deleted /trunk/main/include/lib/bioinfweb-commons-java-core-2.1.0.jar Added /trunk/main/include/lib/bioinfweb-commons-java-core-2.2.0.jar Deleted /trunk/main/include/lib/bioinfweb-commons-java-swing-2.0.0.jar Added /trunk/main/include/lib/bioinfweb-commons-java-swing-2.2.0.jar Modified /trunk/main/src/info/bioinfweb/treegraph/Main.java
		1/9/17 12:47 PM	BenStoever	746	New help code for main menu entry set. Version information updated. Minor changes.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/Main.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/CreateBranchLabelCaptionDocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/help/HelpAboutMenuAction.java
		1/8/17 6:07 PM	BenStoever	745	RecentlyUsedExpressionsListModel now adds new entries to the front of the list.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/RecentlyUsedExpressionsListModel.java
		1/8/17 1:34 PM	BenStoever	744	Documentation comment added.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/CalculateColumnErrorsDialog.java
		1/8/17 12:47 PM	BenStoever	743	Copyright information updated in test project.	[more]
		Action Path Modified /trunk/test/.settings/org.eclipse.jdt.ui.prefs Modified /trunk/test/src/NOTICE.txt Modified /trunk/test/src/info/bioinfweb/treegraph/document/LabelLineTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/LabelsTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/TextElementDataTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/TreeTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/io/ancestralstate/BayesTraitsReaderTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/io/jphyloio/JPhyloIOReaderTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/tools/IDManagerTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/tools/TreeSerializerTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/topologicalcalculation/LeafSetTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/undo/edit/RerootByLeafSetEditTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/undo/edit/SortLeavesEditTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/undo/file/importtable/ImportTableDataTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/document/undo/file/importtable/ImportTableEditTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/test/text/FontMetricsTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/test/text/FontSizeTextHeightTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/test/text/TextDimensionTest.java Modified /trunk/test/src/info/bioinfweb/treegraph/test/text/TextSizeTest.java
		1/8/17 12:47 PM	BenStoever	742	Copyright information updated in main project.	[more]
		Action Path Modified /trunk/main/.settings/org.eclipse.jdt.ui.prefs Modified /trunk/main/src/NOTICE.txt Modified /trunk/main/src/info/bioinfweb/treegraph/AWTExceptionHandler.java Modified /trunk/main/src/info/bioinfweb/treegraph/Main.java Modified /trunk/main/src/info/bioinfweb/treegraph/cmd/CmdLoadLogger.java Modified /trunk/main/src/info/bioinfweb/treegraph/cmd/CmdProcessor.java Modified /trunk/main/src/info/bioinfweb/treegraph/cmd/ImageGenerator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/AbstractPaintableElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/AbstractTextElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Branch.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/ContrastManager.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/CornerRadiusElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Document.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/DuplicateIDException.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/GraphicalLabel.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/HiddenDataElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/HiddenDataMap.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/IconLabel.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Label.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/LabelLine.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Labels.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Legend.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Legends.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/LineElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/NoLinkedNodeException.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Node.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/NodeLadderizeComparable.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/NodeType.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/PaintableElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/PieChartLabel.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/PieColorManager.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/ScaleBar.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/TextElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/TextElementData.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/TextLabel.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/Tree.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/TreeElement.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/TreePath.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/change/DocumentChangeEvent.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/change/DocumentChangeType.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/change/DocumentListener.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/clipboard/ClipboardContentType.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/clipboard/TreeClipboard.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/clipboard/TreeClipboardException.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/BranchFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/ConcreteTextFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/CornerRadiusFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/DistanceDimension.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/DistanceValue.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/ElementFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/FormatUtils.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/GlobalFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/GraphicalLabelFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/IconLabelFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/LabelFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/LegendFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/LegendStyle.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/LineFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/Margin.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/NodeFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/PieChartLabelCaptionContentType.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/PieChartLabelCaptionLinkType.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/PieChartLabelFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/ScaleAlignment.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/ScaleBarFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/ScaleValue.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/TextFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/TextLabelFormats.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/TextOrientation.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/color/BranchLineColorAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/color/ColorAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/color/LabelLineColorAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/color/LabelTextColorAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/color/NodeLineColorAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/color/NodeTextColorAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/AbstractDistanceValueAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/AbstractGraphicalLabelDistanceAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/AbstractLabelDistanceAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/AbstractLegendAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/BranchLineWidthAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/BranchMinLengthAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/BranchSpaceAboveAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/BranchSpaceBelowAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/CornerRadiusAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/DistanceAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelHeightAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelLineWidthAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelMarginBottomAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelMarginLeftAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelMarginRightAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelMarginTopAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelTextHeightAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LabelWidthAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LeafMarginBottomAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LeafMarginLeftAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LeafMarginRightAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LeafMarginTopAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LegendLineWidthAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LegendMarginBottomAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LegendMarginLeftAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LegendMarginRightAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LegendMarginTopAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LegendSpacingAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/LegendTextHeightAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/NodeLineWidthAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/adapters/distance/NodeTextHeightAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractBranchOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractGraphicalLabelOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractIconLabelOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractLabelMarginOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractLabelOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractLeafMarginOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractLegendMarginOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractLegendOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractLineOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractMarginOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractPieChartLabelOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/AbstractTextOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/ConstantWidthOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/CornerRadiusOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/DecimalFormatOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/FontNameOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/FormatOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/IconFilledOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/IconOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/InternalPieChartLinesOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/InvalidTargetException.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelAboveOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelHeightOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelLineNumberOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelLinePositionOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelMarginBottomOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelMarginLeftOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelMarginRightOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelMarginTopOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LabelWidthOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LeafMarginBottomOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LeafMarginLeftOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LeafMarginRightOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LeafMarginTopOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LegendMarginBottomOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LegendMarginLeftOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LegendMarginRightOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LegendMarginTopOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LegendPositionOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LegendStyleOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LineColorOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/LineWidthOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/MinLengthOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/MinSpaceAboveOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/MinSpaceBelowOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/MinTreeDistanceOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/OperatorMap.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/PieChartCaptionTextOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/PieChartCaptionsContentTypeOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/PieChartCaptionsLinkTypeOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/PieColorOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/ScaleBarFormatsOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/ShowPieChartLinesForZeroOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/ShowPieChartTitleOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/TextColorOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/TextHeightOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/TextOrientationOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/format/operate/TextStyleOperator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/AbstractDocumentIterator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/AbstractDocumentReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/AbstractDocumentWriter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/AbstractFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/AbstractXMLFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/DefaultTreeSelector.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/DocumentFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/DocumentIterator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/DocumentReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/DocumentWriter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/MultipleDocumentIterator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/ReadWriteFactory.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/ReadWriteFactoryException.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/ReadWriteFormat.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/ReadWriteParameterMap.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/SingleDocumentIterator.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/SingleReadWriteFactory.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/SupportedFormatsFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/TextStreamReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/TreeFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/TreeSelector.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/ancestralstate/AncestralStateData.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/ancestralstate/BayesTraitsCommandsWriter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/ancestralstate/BayesTraitsReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/jphyloio/NeXMLFactory.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/jphyloio/NeXMLFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/jphyloio/NeXMLReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/BranchLengthsScaler.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/CommentDataReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickException.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickFactory.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickScanner.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickStringChars.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickStringReader.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickStringWriter.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickToken.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickTreeList.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/io/newick/NewickWriter.java Modified 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/trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/positiondata/PieChartLabelPositionData.java Modified /trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/positiondata/PositionData.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/CurrentDirectoryModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/ActionManagement.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/DocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/EditDialogAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CalculateColumnAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/ChangeLabelIDAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CollapseNodeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CollapseNodesBySupportAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CopyAllLabelsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CopyColumnAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CopyElementAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CutAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/DefaultDocumentAdapterAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/DeleteColumnAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/DeleteElementAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/DeleteOutsideIntervalAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/DeleteSubelementsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/EditBranchLengthAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/EditPieChartLabelIDsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/EditTextElementAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/LadderizeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/LadderizeDownAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/LadderizeUpAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/MoveSubtreeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/MoveSubtreeDownAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/MoveSubtreeUpAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/NewIconLabelsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/NewLegendAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/NewNodeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/NewPieChartLabelsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/NewTextLabelAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/PasteAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/RedoAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/RedoToAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/RenameDataIDAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/ReplaceInNodeDataAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/RerootAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/RerootByLeafSetAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/SearchTextAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/SeparateBranchAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/SetColumnToDecimalAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/SetColumnToTextAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/SetColumnTypeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/SortLeavesAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/TreeSelectionCompareParametersAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/UndoAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/UndoRedoToAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/UndoToAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/AddSupportValuesAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/CloseAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/CreateBranchLabelCaptionDocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ExitAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ExportPieChartLabelColorsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ExportTableAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ExportToGraphicAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ExportToPDFAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ExportToTreeFormatAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/GenerateBayesTraitsInputAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ImportBayesTraitsDataAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ImportTableAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/NewDocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/NodeSupportAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/OpenAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/SaveAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/SaveAsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/AutoPositionLabelsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/ColorsByNodeBranchDataAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/DistanceValuesByNodeBranchDataAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/EditElementFormatsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/EditGlobalFormatsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/ReanchorLegendAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/ScaleBranchLengthsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/ScaleDistanceValuesAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/ShowHideScaleBarAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/format/ShowRootedAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/help/AboutAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/help/HelpAboutMenuAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/help/HelpContentsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/help/HelpMainPageAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/help/HelpTopicAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/help/HomepageAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/AbstractSelectionAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/InvertSelectionAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectAllAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectLabelsInSubtreeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectLabelsWithIDAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectLeavesInDocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectLeavesInSubtreeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectLegendsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectLegendsInSubtreeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectLegendsWithPosIndexAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectSubtreeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectTypeInDocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/SelectTypeInSubtreeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/select/TreeSelectionSynchronizeToggleAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/view/ChangePainterIDAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/view/FitZoomToHeightAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/view/FitZoomToWidthAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/view/FitZoomToWidthHeightAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/view/SetUserZoomAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/view/SetZoomAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/view/SetZoomToOriginalAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/window/CascadeAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/window/NextDocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/window/PreviousDocumentAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/window/SelectFrameAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/window/TileHorizontalAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/window/TileVerticalAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/AboutDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/CollapseNodesBySupportDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/CollidingIDsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/CompareTextElementDataParametersPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/DataIDComboBox.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/DecimalUnitInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/DistanceValueInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/EditDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/GlobalFormatsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/MarginInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/OpenedDocumentsComboBoxModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/ReplaceInNodeDataDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/ResolutionInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/ScaleBranchLengthsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/SearchTextDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/SortLeavesDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/SynchronizeTreeSelectionParametersDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/AbstractTextElementDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/ChangeIDDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/EditBranchLengthDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/EditPieChartLabelsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/EditTextElementDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/NewGraphicalLabelsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/NewIconLabelsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/NewPieChartLabelsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/NewTextLabelDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/TextElementDataInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/BranchPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/DecimalFormatPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/DecimalFormatsTableModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/ElementFormatsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/ElementFormatsTab.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/FontColorPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/FontFormatsPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/IconPieChartLabelPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/IconPreviewPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/LabelIconComboBoxModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/LabelPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/LegendPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/LinePanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/NodeMarginPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/PieChartLabelCaptionsTextFormatsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/ScaleBarIntervalKeyListener.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/ScaleBarPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/ScaleValueInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/piecolor/PieColorCellRenderer.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/piecolor/PieColorIcon.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/piecolor/PieColorListEntry.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/AddSupportValueColumnsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/AddSupportValuesDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/FileDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/NewickExceptionDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/NodeSupportDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/OpenDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/TableSeparatorPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/TextFileFilter.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/TreeSelectionDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/ancestralstate/AssignBayesTraitsImportColumnsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/ancestralstate/CharacterInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/ancestralstate/GenerateBayesTraitsInputDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/ancestralstate/ImportBayesTraitsDataDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttographic/ExportToGraphicDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttographic/JPEGPrefPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttographic/PreferencesPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttographic/PreferencesPanelFactory.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttographic/SVGPrefPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttographic/TIFFPrefPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttographic/TransparentBgPrefPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttree/AdditionalDataPanelFactory.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttree/ExportToTreeDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttree/NewickFormatPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttree/NexusFormatPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/exporttree/TreeFormatPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/imexporttable/ExportNodeDataTableModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/imexporttable/ExportTableDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/imexporttable/KeyColumnDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/imexporttable/SelectImportTableDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/loadlogger/LoadLoggerDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/io/loadlogger/MessagesListModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/AbstractNodeBranchDataColumnsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/CopyColumnDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/DefaultDocumentAdapterDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/IntervalDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/NodeBranchDataColumnsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/RecentlyUsedExpressionsListModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/RenameIDDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/TextIDElementTypeInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/CalculateColumnDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/CalculateColumnErrorsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/ErrorsTableModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdatainput/NewNodeBranchDataInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdatainput/NodeBranchDataInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdatainput/NodeDataComboBoxModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdatainput/NodeDataInputListener.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdatainput/PieChartSectionDataList.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/AbstractLabelAdapter.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/ColorAdapterListModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/ColorPreviewPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/ColorsByNodeBranchDataDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/DistanceAdapterListModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/DistanceValuesByNodeBranchDataDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/FormatsByNodeBranchDataDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/ScaleDistanceValuesDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/specialformats/SpecialFormatsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/mainframe/MainFrame.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/mainframe/ToolBarPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/mainframe/TreeSelectionSynchronizer.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/mainframe/TreeViewPanelIterable.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/DocumentTableModel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/HelpButton.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/TreeEditlInputListener.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/TreeInternalFrame.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/TreeScrollPane.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/TreeSelection.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/TreeViewPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/TreeViewPanelListener.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/ruler/RulerOrientation.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/ruler/RulerUnit.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/ruler/TreeViewRuler.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/ruler/TreeViewRulerConstants.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/treeframe/ruler/TreeViewRulerUnitField.java
		1/8/17 12:39 PM	BenStoever	741	CalculateColumnErrorsDialog and related classes added.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/CalculateColumnEdit.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/ErrorInfo.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/CalculateColumnAction.java Deleted /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/CalculateColumnDialog.java Added /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn Added /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/CalculateColumnDialog.java (Copy from /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/CalculateColumnDialog.java @ 739) Added /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/CalculateColumnErrorsDialog.java Added /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/ErrorsTableModel.java Added /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/calculatecolumn/package-info.java
		1/8/17 10:38 AM	BenStoever	740	Bug fix: Labels on invisible root branch can now be selected.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/PhylogramPositioner.java Modified /trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/RectangularCladogramPositioner.java
		1/7/17 2:28 PM	BenStoever	739	Remaining labels in IconPieChartLabelPanel disabled when no pie chart label is selected.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/IconPieChartLabelPanel.java
		1/7/17 1:58 PM	BenStoever	738	Class name and title of PieChartLabelCaptionsTextFormatsDialog adjusted.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/IconPieChartLabelPanel.java Deleted /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/PieChartLabelCaptionsTextDialog.java Added /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/PieChartLabelCaptionsTextFormatsDialog.java (Copy from /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/PieChartLabelCaptionsTextDialog.java @ 736)
		1/7/17 1:50 PM	BenStoever	737	Bug fix in pie chart label caption swapping algorithm.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/label/PieChartLabelPainter.java
		1/7/17 1:38 PM	BenStoever	736	Titles for EditPieChartLabelIDsAction and EditPieChartLabelsDialog adjusted.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/edit/EditPieChartLabelIDsAction.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/EditPieChartLabelsDialog.java
		1/7/17 12:07 PM	BenStoever	735	New help codes set for EditPieChartLabelsDialog and NewPieChartLabelsDialog.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/EditPieChartLabelsDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/NewPieChartLabelsDialog.java
		1/6/17 3:31 PM	BenStoever	734	Bug fix in LabelPanel: Above and below formats are now only assigned if the radio buttons are selected. (Previously e.g. mouse over events were sufficient.)	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/AbstractTextElementDialog.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/editelement/TextElementDataInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/LabelPanel.java
		1/6/17 2:44 PM	BenStoever	733	IconPieChartLabelPanel now registers change monitors as listeners directly. Minor changes.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/DecimalUnitInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/DistanceValueInput.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/IconPieChartLabelPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/LabelPanel.java
		1/6/17 2:27 PM	BenStoever	732	CreateBranchLabelCaptionDocumentAction now leaves pie chart title unchanged, if it is present.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/CreateBranchLabelCaptionDocumentAction.java
		1/6/17 1:49 PM	BenStoever	731	Bug fix: Case that root labels need more space than their branch is now considered in calculating the document width. Minor changes.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/PhylogramPositioner.java Modified /trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/RectangularCladogramPositioner.java
		1/5/17 9:09 PM	BenStoever	730	ExportPieChartLabelColorsAction now also exports pie chart label title.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/actions/file/ExportPieChartLabelColorsAction.java
		1/5/17 7:36 PM	BenStoever	729	Bug fix in DefaultValueIDFunction: Evaluating references to parent values now works. SubstringFunction renamed to SubsequenceFunction.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/CalculateColumnEdit.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/DefaultValueIDFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/SubsequenceFunction.java (Copy from /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/SubstringFunction.java @ 727) Deleted /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/SubstringFunction.java
		1/5/17 6:49 PM	BenStoever	728	Adjustment in CalculateColumnDialog.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/nodebranchdata/CalculateColumnDialog.java
		1/5/17 4:52 PM	BenStoever	727	String functions for CalculateColumnEdit added.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/CalculateColumnEdit.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/AbstractFunction.java Modified /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/DefaultValueIDFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/AbstractStringFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/ContainsFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/EndsWithFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/FirstIndexOfFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/LastIndexOfFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/ReplaceAllFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/ReplaceFirstFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/StartsWithFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/SubstringFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/ToLowerCaseFunction.java Added /trunk/main/src/info/bioinfweb/treegraph/document/undo/edit/calculatecolumn/string/ToUpperCaseFunction.java
		1/5/17 1:53 PM	BenStoever	726	Menu separator added.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/gui/mainframe/MainFrame.java
		1/5/17 11:45 AM	BenStoever	725	DecimalFormatPanel instance added to PieChartLabelCaptionsTextDialog to allow setting the decimal format of section values.	[more]
		Action Path Modified /trunk/main/src/info/bioinfweb/treegraph/graphics/positionpaint/label/PieChartLabelPainter.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/DecimalFormatPanel.java Modified /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/IconPieChartLabelPanel.java Deleted /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/PieChartLabelCaptionsFontDialog.java Added /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/PieChartLabelCaptionsTextDialog.java (Copy from /trunk/main/src/info/bioinfweb/treegraph/gui/dialogs/elementformats/PieChartLabelCaptionsFontDialog.java @ 722)
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