Download version 0.3.0 of AlignmentComparator

You are downloading an older version (0.3.0-242 alpha) of AlignmentComparator which was released on 2018-02-26 16:03:00.0 The latest version can be found here.


GNU General Public License, version 3

AlignmentComparator is distributed under GNU General Public License. Copyright (C) 2012-2018 by Ben Stöver. This program is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See the GNU General Public License for more details.

By downloading AlignmentComparator you agree with the License. Please read it carefully.


Complete download

The complete download contains the classes of all components associated with this release.

Binary release (all platforms) Download icon AlignmentComparator

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Developers can also check out the source codes directly from the subversion repository under

Changes in this version

  • Open dialog now allows to filter files.
  • Labels for single compared alignment are now visible on every horizontal scroll position.
  • Bug fix: Superalignment along guide tree using the maximum sequence pair match algorithm now works correctly. (No alignment is shifted anymore.)
  • Bug fix: Single compared alignments do not move right anymore when zoomed out.
  • Bug fix: When opening a results file or starting a new comparison, the user is now asked to save the current comparison. (Fixes bug #178.)
  • Bug fix: Layout problems in dialog to start a comparison are fixed.
  • Bug fix: Duplicate empty namespace definitions are now avoided when saving a comparison to NeXML multiple times.
  • Bug fix: Correct height is now assigned to the components displaying single compared alignments, when a new comparison is performed or opened. (Fixes bug #177.)

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