Available versions of AlignmentComparator
Click on a version to see the available downloads.
| Version |
Since |
Modules |
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1.1.0-299 beta
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2018-04-18 18:20:00.0 |
- Average unaligned position approach improved by calculating relative positions within gaps and selecting column merge sides depending in future merges.
- Average columns positions are now shown again in the GUI when using this comparison approach.
- Average unaligned position approach now uses absolute instead of relative sequence positions. (As a result all regions are now always superaligned equally, no matter which sequence patterns are found in front of them.)
- Corresponding positions in other MSAs are now highlighted when selecting columns in one MSA.
- Amino acid color schema is now available.
- Bug fix: Action status is now refreshed when the comment selection is changed.
- Further bug fixes.
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1.0.0-250 beta
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2018-03-01 12:20:00.0 |
- Feature to attach comments to compared columns reintroduced.
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0.3.0-242 alpha
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2018-02-26 16:03:00.0 |
- Open dialog now allows to filter files.
- Labels for single compared alignment are now visible on every horizontal scroll position.
- Bug fix: Superalignment along guide tree using the maximum sequence pair match algorithm now works correctly. (No alignment is shifted anymore.)
- Bug fix: Single compared alignments do not move right anymore when zoomed out.
- Bug fix: When opening a results file or starting a new comparison, the user is now asked to save the current comparison. (Fixes bug #178.)
- Bug fix: Layout problems in dialog to start a comparison are fixed.
- Bug fix: Duplicate empty namespace definitions are now avoided when saving a comparison to NeXML multiple times.
- Bug fix: Correct height is now assigned to the components displaying single compared alignments, when a new comparison is performed or opened. (Fixes bug #177.)
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0.2.0-231 alpha
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2018-02-22 16:35:00.0 |
- Maximum sequence pair match comparison algorithm is now able to compare more than two alignments at a time.
- Log information during maximum sequence pair match comparison is written to standard out. Start AlignmentComparator from command line, if you want to see it.
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0.1.0-193 alpha
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2018-02-13 20:25:00.0 |
- Maximum sequence pair match comparison algorithm added.
- Average index comparison algorithm added, which can also compare more than two alignments at the same time.
- GUI components are now based on LibrAlign.
- Each compared alignment now has its own scroll container.
- NeXML now used to store comparison results.
- I/O is now based on JPhyloIO which allows to read FASTA, Phylip, Nexus and NeXML.
- Functionality to add comments and manually edit the superalignment is currently not available.
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0.0.0-78 alpha
|
2014-06-30 11:02:00.0 |
- Initial release of AlignmentComparator
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