Available versions of AlignmentComparator

Click on a version to see the available downloads.

First entry:    Number of entries:    alpha   beta   release candidate   release  
Version Since Modules
1.1.0-299 beta Apr 18, 2018 6:20:00 PM
  • Average unaligned position approach improved by calculating relative positions within gaps and selecting column merge sides depending in future merges.
  • Average columns positions are now shown again in the GUI when using this comparison approach.
  • Average unaligned position approach now uses absolute instead of relative sequence positions. (As a result all regions are now always superaligned equally, no matter which sequence patterns are found in front of them.)
  • Corresponding positions in other MSAs are now highlighted when selecting columns in one MSA.
  • Amino acid color schema is now available.
  • Bug fix: Action status is now refreshed when the comment selection is changed.
  • Further bug fixes.
1.0.0-250 beta Mar 1, 2018 12:20:00 PM
  • Feature to attach comments to compared columns reintroduced.
0.3.0-242 alpha Feb 26, 2018 4:03:00 PM
  • Open dialog now allows to filter files.
  • Labels for single compared alignment are now visible on every horizontal scroll position.
  • Bug fix: Superalignment along guide tree using the maximum sequence pair match algorithm now works correctly. (No alignment is shifted anymore.)
  • Bug fix: Single compared alignments do not move right anymore when zoomed out.
  • Bug fix: When opening a results file or starting a new comparison, the user is now asked to save the current comparison. (Fixes bug #178.)
  • Bug fix: Layout problems in dialog to start a comparison are fixed.
  • Bug fix: Duplicate empty namespace definitions are now avoided when saving a comparison to NeXML multiple times.
  • Bug fix: Correct height is now assigned to the components displaying single compared alignments, when a new comparison is performed or opened. (Fixes bug #177.)
0.2.0-231 alpha Feb 22, 2018 4:35:00 PM
  • Maximum sequence pair match comparison algorithm is now able to compare more than two alignments at a time.
  • Log information during maximum sequence pair match comparison is written to standard out. Start AlignmentComparator from command line, if you want to see it.
0.1.0-193 alpha Feb 13, 2018 8:25:00 PM
  • Maximum sequence pair match comparison algorithm added.
  • Average index comparison algorithm added, which can also compare more than two alignments at the same time.
  • GUI components are now based on LibrAlign.
  • Each compared alignment now has its own scroll container.
  • NeXML now used to store comparison results.
  • I/O is now based on JPhyloIO which allows to read FASTA, Phylip, Nexus and NeXML.
  • Functionality to add comments and manually edit the superalignment is currently not available.
0.0.0-78 alpha Jun 30, 2014 11:02:00 AM
  • Initial release of AlignmentComparator
First entry:    Number of entries:    alpha   beta   release candidate   release  
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AlignmentComparator poster IPAM MSA Workshop 2015 Conference poster at IPAM MSA Workshop in Jan 2015

AlignmentComparator poster at MSGE Symposium 2014 Conference poster at MSGE Symposium in June 2014

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