Download version 0.5.0 of LibrAlign

You are downloading an older version (0.5.0-879 beta) of LibrAlign which was released on 2017-09-29 19:15:00.0 The latest version can be found here.

License

LibrAlign is distributed under GNU Lesser General Public License. Copyright (C) 2014-2018 by Ben Stöver. This program is distributed in the hope that it will be useful, but without any warranty; without even the implied warranty of merchantability or fitness for a particular purpose. See the GNU Lesser General Public License for more details.

By downloading LibrAlign you agree with the License. Please read it carefully.

Note that the releases 0.3.0 and earlier were distributed under GNU General Public License instead.

Downloads

Complete download

The complete download contains the classes of all components associated with this release.

Complete binary, sources, docs	LibrAlign complete-0.5.0.zip
Complete binary only	LibrAlign complete-0.5.0-bin.zip

[Browse source codes] [Browse JavaDoc]

Single component downloads

The following components are associated with version 0.5.0. Components that were updated in this version are shown in bold.

Component	Module binary JAR	Module sources
Core	core-0.5.0.jar	core-0.5.0-source.zip
Swing	swing-0.5.0.jar	swing-0.5.0-source.zip
SWT	swt-0.5.0.jar	swt-0.5.0-source.zip
IO	io-0.4.0.jar	io-0.4.0-source.zip
BioJava1	biojava1-0.4.0.jar	biojava1-0.4.0-source.zip

Subversion

Developers can also check out the source codes directly from the subversion repository under https://secure.bioinfweb.info/Code/svn/LibrAlign/trunk/main/.

Maven

Developers can use the following code to add dependencies for the modules of LibrAlign to their Maven project.

Dependencies

<dependency>
    <groupId>info.bioinfweb.libralign</groupId>
    <artifactId>libralign-core</artifactId>
    <version>0.5.0</version>
</dependency>

<dependency>
    <groupId>info.bioinfweb.libralign</groupId>
    <artifactId>libralign-swing</artifactId>
    <version>0.5.0</version>
</dependency>

<dependency>
    <groupId>info.bioinfweb.libralign</groupId>
    <artifactId>libralign-swt</artifactId>
    <version>0.5.0</version>
</dependency>

<dependency>
    <groupId>info.bioinfweb.libralign</groupId>
    <artifactId>libralign-io</artifactId>
    <version>0.4.0</version>
</dependency>

<dependency>
    <groupId>info.bioinfweb.libralign</groupId>
    <artifactId>libralign-biojava1</artifactId>
    <version>0.4.0</version>
</dependency>

Repository

<repository>
    <id>bioinfweb-maven-repo</id>
    <name>bioinfweb repository</name>
    <url>http://bioinfweb.info/MavenRepository/</url>
</repository>

Changes in this version

All modules now require Java 8.
New version of core module included.
New version of swing module included.
New version of swt module included.

Core

Painting of AlignmentSubAreas is now done in a new method that is called by the TIC paint method. (This allows the graphical output of a whole alignment to a single paint area.)
Interfaces for toolkit-specific components reduced.
Scrolling is now performed toolkit-independently in AlignmentArea using new functionality of TIC 3.0.0.
ToolkitSpecificAlignmentContentArea.hasSubcomponents() added. (SWT module now supports displaying alignments with or without using subcomponents for each sequence and data area.)
GUITools added.
SequentialAccessIndexTranslator added.
Bug fixes in RandomAccessIndexTranslator.
DataAreaModel renamed to DataAreasModel
DataAreaModelListener renamed to DataAreasModelListener.
JavaDoc updated and extended.

Swing

Simplified split pane creation in SwingMultipleAlignmentsContainer.
Swing scroll increment changed for alignment areas.
Further adjustments to changes in core module.
JavaDoc updated and extended.

SWT

AlignmentArea in SWT can now alternatively use subcomponents for each sequence and data area or paint the whole alignment on a shared component. (DirectPaintingSWTAlignmentArea allows displaying alignments that are longer than the maximum component size in SWT under Windows and Linux (2^16 / 2 - 1) by painting on a single component. ScrollContainerSWTAlignmentArea left as an alternative implementation that still creates subcomponents.)
SWT alignment label area now allows to have a height beyond the component size limitation of SWT under Windows and Linux.
SWT scroll increment changed for alignment areas.
Further adjustments to changes in core module.
JavaDoc updated and extended.

Other versions

The following links lead you to lists of all releases of the different components.