JPhyloIO event lister

Source: https://secure.bioinfweb.info/Code/svn/JPhyloIO/trunk/demo/info.bioinfweb.jphyloio.demo.eventwebview/data/examples/NeXML/Simple.xml

JPhyloIO version: 0.5.4-1672 alpha

Event stream

DOCUMENT.START (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

OTU_LIST.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null

OTU.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null

OTU.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

OTU.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "species2"

OTU.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

OTU.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null

OTU.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

OTU_LIST.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

ALIGNMENT.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxonlist"

CHARACTER_DEFINITION.START (info.bioinfweb.jphyloio.events.CharacterDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • index: 0

CHARACTER_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

CHARACTER_DEFINITION.START (info.bioinfweb.jphyloio.events.CharacterDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • index: 1

CHARACTER_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

CHARACTER_DEFINITION.START (info.bioinfweb.jphyloio.events.CharacterDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • index: 2

CHARACTER_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

CHARACTER_DEFINITION.START (info.bioinfweb.jphyloio.events.CharacterDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • index: 3

CHARACTER_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

CHARACTER_DEFINITION.START (info.bioinfweb.jphyloio.events.CharacterDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • index: 4

CHARACTER_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

CHARACTER_SET.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "alignment"

CHARACTER_SET_INTERVAL.SOLE (info.bioinfweb.jphyloio.events.CharacterSetIntervalEvent) [JavaDoc] [Source code]

Properties:

  • end: 1
  • start: 0

CHARACTER_SET_INTERVAL.SOLE (info.bioinfweb.jphyloio.events.CharacterSetIntervalEvent) [JavaDoc] [Source code]

Properties:

  • end: 4
  • start: 2

CHARACTER_SET.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

CHARACTER_SET.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "alignment"

CHARACTER_SET_INTERVAL.SOLE (info.bioinfweb.jphyloio.events.CharacterSetIntervalEvent) [JavaDoc] [Source code]

Properties:

  • end: 3
  • start: 2

CHARACTER_SET_INTERVAL.SOLE (info.bioinfweb.jphyloio.events.CharacterSetIntervalEvent) [JavaDoc] [Source code]

Properties:

  • end: 5
  • start: 4

CHARACTER_SET.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

TOKEN_SET_DEFINITION.START (info.bioinfweb.jphyloio.events.TokenSetDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: "DNA"
  • setType: DNA

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • constituents: null
  • tokenType: ATOMIC_STATE
  • meaning: CHARACTER_STATE
  • tokenName: "A"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • constituents: null
  • tokenType: ATOMIC_STATE
  • meaning: CHARACTER_STATE
  • tokenName: "C"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • constituents: null
  • tokenType: ATOMIC_STATE
  • meaning: CHARACTER_STATE
  • tokenName: "G"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • constituents: null
  • tokenType: ATOMIC_STATE
  • meaning: CHARACTER_STATE
  • tokenName: "T"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • constituents: ["A", "C", "G", "T"]
  • tokenType: UNCERTAIN
  • meaning: CHARACTER_STATE
  • tokenName: "N"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • constituents: []
  • tokenType: UNCERTAIN
  • meaning: GAP
  • tokenName: "-"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • constituents: ["-", "A", "C", "G", "T"]
  • tokenType: UNCERTAIN
  • meaning: MISSING
  • tokenName: "?"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

CHARACTER_SET_INTERVAL.SOLE (info.bioinfweb.jphyloio.events.CharacterSetIntervalEvent) [JavaDoc] [Source code]

Properties:

  • end: 5
  • start: 0

TOKEN_SET_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SEQUENCE.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon1"

SEQUENCE_TOKENS.SOLE (info.bioinfweb.jphyloio.events.SequenceTokensEvent) [JavaDoc] [Source code]

Properties:

  • tokens: ["A", "A", "C", "T", "G"]

SEQUENCE.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

SEQUENCE.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon2"

SEQUENCE_TOKENS.SOLE (info.bioinfweb.jphyloio.events.SequenceTokensEvent) [JavaDoc] [Source code]

Properties:

  • tokens: ["A", "C", "G", "T", "T"]

SEQUENCE.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

SEQUENCE.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon3"

SEQUENCE_TOKENS.SOLE (info.bioinfweb.jphyloio.events.SequenceTokensEvent) [JavaDoc] [Source code]

Properties:

  • tokens: ["A", "C", "C", "T", "G"]

SEQUENCE.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

ALIGNMENT.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

TREE_NETWORK_GROUP.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "trees"
  • linkedID: "taxonlist"

TREE.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon1"
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon2"
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon3"
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: null
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: null
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

ROOT_EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: 0.778
  • targetID: "node4"
  • sourceID: null

ROOT_EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: 1.0
  • targetID: "node5"
  • sourceID: "node4"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: NaN
  • targetID: "node3"
  • sourceID: "node4"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: 0.98
  • targetID: "node1"
  • sourceID: "node5"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: NaN
  • targetID: "node2"
  • sourceID: "node5"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

TREE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NETWORK.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon1"
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon2"
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: "taxon3"
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: null
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NODE.START (info.bioinfweb.jphyloio.events.NodeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • linkedID: null
  • rootNode: false

NODE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: 0.44
  • targetID: "node10"
  • sourceID: "node9"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: 0.67
  • targetID: "node8"
  • sourceID: "node9"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: NaN
  • targetID: "node6"
  • sourceID: "node10"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: NaN
  • targetID: "node7"
  • sourceID: "node10"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

EDGE.START (info.bioinfweb.jphyloio.events.EdgeEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • length: NaN
  • targetID: "node8"
  • sourceID: "node7"

EDGE.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

NETWORK.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

TREE_NETWORK_GROUP.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

DOCUMENT.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]


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