Publications
Journal article
If you produce a published work, which uses the sources or binaries of JPhyloIO please cite the following paper:
Stöver BC, Wiechers S, Müller KF: JPhyloIO: A Java library for event-based reading and writing of different phylogenetic file formats through a common interface. BMC Bioinformatics 2019, 20:402
Conference poster
Wiechers S, M?ller KF, St?ver BC: Increasing data accessibility and reuse in phylogenetics by employing externally defined ontologies. 6th annual Symposium of the M?nster Graduate School of Evolution; M?nster, Germany; 2017
St?ver BC, Wiechers S, M?ller KF: JPhyloIO - A Java library for event-based reading and writing of different alignment and tree formats through one common interface. European Conference on Computational Biology (ECCB); The Hague, The Netherlands; 2016
Theses
- Chapter 2 of the PhD thesis Software Components for increased Data Reuse and Reproducibility in Phylogenetics and Phylogenomics gives an overview on JPhyloIO. (Full Text)
- The master thesis Development and implementation of software components increasing the accessibility of phylogenetic metadata., WWU Münster, 2016 contains further information on the implementation of support for the XML formats.
