JPhyloIO event lister

Source: https://secure.bioinfweb.info/Code/svn/JPhyloIO/trunk/demo/info.bioinfweb.jphyloio.demo.eventwebview/data/examples/Nexus/MatrixCharSet.nex

JPhyloIO version: 1.0.0-1681 beta

Event stream

DOCUMENT.START (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

OTU_LIST.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • id: "otus0"

OTU.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "A"
  • id: "otu1"

OTU.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

OTU.START (info.bioinfweb.jphyloio.events.LabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "B"
  • id: "otu2"

OTU.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

OTU_LIST.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

ALIGNMENT.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "someMatrix"
  • id: "matrix3"
  • linkedID: "otus0"

LITERAL_META.START (info.bioinfweb.jphyloio.events.meta.LiteralMetadataEvent) [JavaDoc] [Source code]

Properties:

  • label: "ntax"
  • id: "meta4"
  • sequenceType: SIMPLE
  • originalType: null
  • alternativeStringValue: null
  • predicate: ({http://bioinfweb.info/xmlns/JPhyloIO/General/Predicates/}sequenceCount, ntax)

LITERAL_META_CONTENT.SOLE (info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent) [JavaDoc] [Source code]

Properties:

  • continuedInNextEvent: false
  • objectValue: 2
  • stringValue: "2"

LITERAL_META.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

LITERAL_META.START (info.bioinfweb.jphyloio.events.meta.LiteralMetadataEvent) [JavaDoc] [Source code]

Properties:

  • label: "nchar"
  • id: "meta5"
  • sequenceType: SIMPLE
  • originalType: null
  • alternativeStringValue: null
  • predicate: ({http://bioinfweb.info/xmlns/JPhyloIO/General/Predicates/}characterCount, nchar)

LITERAL_META_CONTENT.SOLE (info.bioinfweb.jphyloio.events.meta.LiteralMetadataContentEvent) [JavaDoc] [Source code]

Properties:

  • continuedInNextEvent: false
  • objectValue: 7
  • stringValue: "7"

LITERAL_META.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

TOKEN_SET_DEFINITION.START (info.bioinfweb.jphyloio.events.TokenSetDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: "DNA"
  • id: "tokenSet6"
  • setType: DNA

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • id: "tokenDefinition7"
  • constituents: null
  • tokenType: null
  • meaning: MISSING
  • tokenName: "?"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SINGLE_TOKEN_DEFINITION.START (info.bioinfweb.jphyloio.events.SingleTokenDefinitionEvent) [JavaDoc] [Source code]

Properties:

  • label: null
  • id: "tokenDefinition8"
  • constituents: null
  • tokenType: null
  • meaning: GAP
  • tokenName: "-"

SINGLE_TOKEN_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

TOKEN_SET_DEFINITION.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

SEQUENCE.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "A"
  • id: "seq0"
  • linkedID: "otu1"

SEQUENCE_TOKENS.SOLE (info.bioinfweb.jphyloio.events.SequenceTokensEvent) [JavaDoc] [Source code]

Properties:

  • tokens: ["C", "G", "G", "T", "C", "A", "T"]

SEQUENCE.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

SEQUENCE.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "B"
  • id: "seq1"
  • linkedID: "otu2"

SEQUENCE_TOKENS.SOLE (info.bioinfweb.jphyloio.events.SequenceTokensEvent) [JavaDoc] [Source code]

Properties:

  • tokens: ["C", "G", "-", "T", "C", "T", "T"]

SEQUENCE.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

ALIGNMENT.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]

COMMENT.SOLE (info.bioinfweb.jphyloio.events.CommentEvent) [JavaDoc] [Source code]

Properties:

  • continuedInNextEvent: false
  • content: "comment 1"

CHARACTER_SET.START (info.bioinfweb.jphyloio.events.LinkedLabeledIDEvent) [JavaDoc] [Source code]

Properties:

  • label: "someSet"
  • id: "id9"
  • linkedID: "matrix3"

CHARACTER_SET_INTERVAL.SOLE (info.bioinfweb.jphyloio.events.CharacterSetIntervalEvent) [JavaDoc] [Source code]

Properties:

  • end: 1
  • start: 0

CHARACTER_SET_INTERVAL.SOLE (info.bioinfweb.jphyloio.events.CharacterSetIntervalEvent) [JavaDoc] [Source code]

Properties:

  • end: 6
  • start: 3

CHARACTER_SET.END (info.bioinfweb.jphyloio.events.PartEndEvent) [JavaDoc] [Source code]

Properties:

  • terminated: true

DOCUMENT.END (info.bioinfweb.jphyloio.events.ConcreteJPhyloIOEvent) [JavaDoc] [Source code]


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