info.bioinfweb.libralign.alignmentarea.content

Class SequenceAreaMap

java.lang.Object

java.util.AbstractMap<K,V>

java.util.TreeMap<java.lang.String,SequenceArea>

info.bioinfweb.libralign.alignmentarea.content.SequenceAreaMap

All Implemented Interfaces:

SelectionListener<info.bioinfweb.commons.events.GenericEventObject<SelectionModel>>, java.io.Serializable, java.lang.Cloneable, java.util.EventListener, java.util.Map<java.lang.String,SequenceArea>, java.util.NavigableMap<java.lang.String,SequenceArea>, java.util.SortedMap<java.lang.String,SequenceArea>

public class SequenceAreaMap
extends java.util.TreeMap<java.lang.String,SequenceArea>
implements SelectionListener<info.bioinfweb.commons.events.GenericEventObject<SelectionModel>>

Manages the SequenceAreas that are contained in an implementation of ToolkitSpecificMultipleAlignmentsContainer.

Since:

0.0.0

Author:

Ben Stöver

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.util.AbstractMap

java.util.AbstractMap.SimpleEntry<K,V>, java.util.AbstractMap.SimpleImmutableEntry<K,V>

Constructor Summary

Constructors

Constructor and Description
SequenceAreaMap(AlignmentContentArea owner)

Method Summary

Modifier and Type	Method and Description
AlignmentContentArea	getOwner()
void	repaintSequenceAreas()
void	selectionChanged(info.bioinfweb.commons.events.GenericEventObject<SelectionModel> e) This method is called every time the selection changes.
void	updateElements() Removes sequence areas for sequences that are not present anymore in the linked AlignmentModel and adds new sequence areas for new sequences in the provider which were not present at the last call of this method.

Methods inherited from class java.util.TreeMap

ceilingEntry, ceilingKey, clear, clone, comparator, containsKey, containsValue, descendingKeySet, descendingMap, entrySet, firstEntry, firstKey, floorEntry, floorKey, forEach, get, headMap, headMap, higherEntry, higherKey, keySet, lastEntry, lastKey, lowerEntry, lowerKey, navigableKeySet, pollFirstEntry, pollLastEntry, put, putAll, remove, replace, replace, replaceAll, size, subMap, subMap, tailMap, tailMap, values

Methods inherited from class java.util.AbstractMap

equals, hashCode, isEmpty, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Map

compute, computeIfAbsent, computeIfPresent, equals, getOrDefault, hashCode, isEmpty, merge, putIfAbsent, remove

Constructor Detail

SequenceAreaMap

public SequenceAreaMap(AlignmentContentArea owner)

Method Detail

getOwner

public AlignmentContentArea getOwner()

updateElements

public void updateElements()

Removes sequence areas for sequences that are not present anymore in the linked AlignmentModel and adds new sequence areas for new sequences in the provider which were not present at the last call of this method.

Since:

0.3.0

repaintSequenceAreas

public void repaintSequenceAreas()

selectionChanged

public void selectionChanged(info.bioinfweb.commons.events.GenericEventObject<SelectionModel> e)

Description copied from interface: SelectionListener

This method is called every time the selection changes.

Specified by:

selectionChanged in interface SelectionListener<info.bioinfweb.commons.events.GenericEventObject<SelectionModel>>

Parameters:

e - an object containing further information on this event