info.bioinfweb.libralign.alignmentarea.tokenpainter

Interface ColorOverlay

public interface ColorOverlay

Classes implementing this interface define areas in the alignment that should be overlain with a certain color.

Since:

0.9.0

Author:

Ben Stöver

Method Summary

Modifier and Type	Method and Description
java.awt.Color	getColor(AlignmentArea alignmentArea, java.lang.String sequenceID, int columnIndex) Determines the color to overlay the specified cell of the alignment.

Method Detail

getColor

java.awt.Color getColor(AlignmentArea alignmentArea,
                        java.lang.String sequenceID,
                        int columnIndex)

Determines the color to overlay the specified cell of the alignment.

Parameters:

alignmentArea - the alignment area containing the cell to be painted

sequenceID - the ID of the sequence containing the token to be painted

columnIndex - the column of the cell to be painted

Returns:

the overlay color or null if no overlay should be done in this cell