info.bioinfweb.libralign.dataarea.implementations.charset

Class CharSet

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractSet<E>

java.util.TreeSet<SimpleSequenceInterval>

info.bioinfweb.commons.collections.NonOverlappingIntervalList

info.bioinfweb.libralign.dataarea.implementations.charset.CharSet

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, java.lang.Iterable<SimpleSequenceInterval>, java.util.Collection<SimpleSequenceInterval>, java.util.NavigableSet<SimpleSequenceInterval>, java.util.Set<SimpleSequenceInterval>, java.util.SortedSet<SimpleSequenceInterval>

public class CharSet
extends NonOverlappingIntervalList

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
CharSet(java.lang.String name, java.awt.Color color)

Method Summary

Modifier and Type	Method and Description
boolean	add(int firstPos, int lastPos)
java.awt.Color	getColor()
protected java.util.Set<CharSetDataModel>	getModels() Returns a set of model classes that contain this character set.
java.lang.String	getName()
boolean	remove(int firstPos, int lastPos)
boolean	remove(java.lang.Object o)
void	setColor(java.awt.Color color)
void	setName(java.lang.String name)

Methods inherited from class info.bioinfweb.commons.collections.NonOverlappingIntervalList

add, add, addAll, addAll, contains, containsAll, getOverlappingElements, movePositions

Methods inherited from class java.util.TreeSet

addAll, ceiling, clear, clone, comparator, contains, descendingIterator, descendingSet, first, floor, headSet, headSet, higher, isEmpty, iterator, last, lower, pollFirst, pollLast, size, spliterator, subSet, subSet, tailSet, tailSet

Methods inherited from class java.util.AbstractSet

equals, hashCode, removeAll

Methods inherited from class java.util.AbstractCollection

containsAll, retainAll, toArray, toArray, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Set

containsAll, equals, hashCode, removeAll, retainAll, toArray, toArray

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream

Methods inherited from interface java.lang.Iterable

forEach

Constructor Detail

CharSet

public CharSet(java.lang.String name,
               java.awt.Color color)

Method Detail

getName

public java.lang.String getName()

setName

public void setName(java.lang.String name)

getColor

public java.awt.Color getColor()

setColor

public void setColor(java.awt.Color color)

add

public boolean add(int firstPos,
                   int lastPos)

Overrides:

add in class NonOverlappingIntervalList

remove

public boolean remove(java.lang.Object o)

Specified by:

remove in interface java.util.Collection<SimpleSequenceInterval>

Specified by:

remove in interface java.util.Set<SimpleSequenceInterval>

Overrides:

remove in class NonOverlappingIntervalList

remove

public boolean remove(int firstPos,
                      int lastPos)

Overrides:

remove in class NonOverlappingIntervalList

getModels

protected java.util.Set<CharSetDataModel> getModels()

Returns a set of model classes that contain this character set.

This property is only meant for internal use in LibrAlign and should not be used in application code directly and is not visible there. It is used to inform model classes of property changes of an contained character set.

Returns:

the set of models containing this instance