info.bioinfweb.libralign.multiplealignments

Class AlignmentAreaList

java.lang.Object

info.bioinfweb.commons.collections.ListDecorator<E>

info.bioinfweb.commons.collections.observable.ObservableList<AlignmentArea>

info.bioinfweb.libralign.multiplealignments.AlignmentAreaList

All Implemented Interfaces:

java.lang.Iterable<AlignmentArea>, java.util.Collection<AlignmentArea>, java.util.List<AlignmentArea>

public class AlignmentAreaList
extends ObservableList<AlignmentArea>

A list implementation MultipleAlignmentsContainer uses to manage its contained alignment areas.

Note that this list is not thread safe and should only be modified from the GUI thread (e.g. the Swing thread) since made modifications might trigger GUI updates.

Since:

0.3.0

Author:

Ben Stöver

Constructor Summary

Constructors

Constructor and Description
AlignmentAreaList(MultipleAlignmentsContainer owner)

Method Summary

Modifier and Type	Method and Description
protected void	afterAdd(int index, java.util.Collection<? extends AlignmentArea> addedElements)
protected void	afterRemove(int index, java.util.Collection<? extends AlignmentArea> removedElements)
protected void	afterReplace(int index, AlignmentArea previousElement, AlignmentArea currentElement)
protected void	beforeAdd(int index, java.util.Collection<? extends AlignmentArea> addedElements)
MultipleAlignmentsContainer	getOwner()
protected info.bioinfweb.libralign.multiplealignments.PaintSettingsSynchronizer	getPaintSettingsSynchronizer()

Methods inherited from class info.bioinfweb.commons.collections.observable.ObservableList

addListChangeListener, beforeRemove, beforeReplace, removeListChangeListener

Methods inherited from class info.bioinfweb.commons.collections.ListDecorator

add, add, addAll, addAll, clear, contains, containsAll, createDecoratedListIterator, equals, get, getUnderlyingList, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, size, subList, toArray, toArray

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.List

replaceAll, sort, spliterator

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream

Methods inherited from interface java.lang.Iterable

forEach

Constructor Detail

AlignmentAreaList

public AlignmentAreaList(MultipleAlignmentsContainer owner)

Method Detail

getOwner

public MultipleAlignmentsContainer getOwner()

getPaintSettingsSynchronizer

protected info.bioinfweb.libralign.multiplealignments.PaintSettingsSynchronizer getPaintSettingsSynchronizer()

beforeAdd

protected void beforeAdd(int index,
                         java.util.Collection<? extends AlignmentArea> addedElements)

Overrides:

beforeAdd in class ObservableList<AlignmentArea>

afterAdd

protected void afterAdd(int index,
                        java.util.Collection<? extends AlignmentArea> addedElements)

Overrides:

afterAdd in class ObservableList<AlignmentArea>

afterRemove

protected void afterRemove(int index,
                           java.util.Collection<? extends AlignmentArea> removedElements)

Overrides:

afterRemove in class ObservableList<AlignmentArea>

afterReplace

protected void afterReplace(int index,
                            AlignmentArea previousElement,
                            AlignmentArea currentElement)

Overrides:

afterReplace in class ObservableList<AlignmentArea>