info.bioinfweb.libralign.pherogram.view

Class PherogramTraceCurveView

java.lang.Object

info.bioinfweb.tic.TICComponent

info.bioinfweb.libralign.pherogram.view.PherogramTraceCurveView

All Implemented Interfaces:

PherogramComponent

public class PherogramTraceCurveView
extends TICComponent
implements PherogramComponent

GUI component that allows displaying a pherogram (trace file from Sanger sequencing) which is not attached to a sequence in an AlignmentArea.

Concrete GUI components for Swing or SWT can be created using #createSwingComponent() or #createSWTWidget(org.eclipse.swt.widgets.Composite, int) as this class is a TIC component.

Author:

Ben Stöver

See Also:

PherogramView, PherogramArea

Field Summary

Fields inherited from class info.bioinfweb.tic.TICComponent

DISPATCHER_MAP, repaintRequested

Constructor Summary

Constructors

Constructor and Description
PherogramTraceCurveView()

Method Summary

Modifier and Type	Method and Description
protected SimpleSequenceInterval	calculatePaintRange(TICPaintEvent e)
PherogramFormats	getFormats() Returns the format object that is used to paint the displayed pherogram.
PherogramHeadingView	getHeadingView()
double	getHorizontalScale()
PherogramComponentModel	getModel() Returns the model providing the base call sequence, the trace curves and the cut positions.
PherogramPainter	getPainter()
java.awt.Dimension	getSize()
double	getVerticalScale()
int	getWidth()
void	paint(TICPaintEvent e)
protected void	repaintAll() Repaints this component and the associated heading component.
void	setHeadingView(PherogramHeadingView headingView) Use this method to specify the heading component used together with this component.
void	setHorizontalScale(double horizontalScale)
void	setModel(PherogramComponentModel model)
void	setVerticalScale(double value) Sets the horizontal zoom factor that shall used for displaying the trace curves.
protected void	updateUI() Resizes and repaints this component and the associated heading component.

Methods inherited from class info.bioinfweb.tic.TICComponent

addKeyListener, addMouseListener, addMouseWheelListener, assignSize, dispatchEvent, getCurrentToolkit, getKeyListenersSet, getMouseListenersSet, getMouseWheelListenersSet, getSwingComponentClassName, getSwingComponentConstructorParameters, getSWTComponentClassName, getSWTComponentConstructorParameters, getToolkitComponent, hasDefinedSize, hasToolkitComponent, isUpdateOngoing, removeKeyListener, removeMouseListener, removeWheelMouseListener, repaint, setToolkitComponent, setUpdateOngoing

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PherogramTraceCurveView

public PherogramTraceCurveView()

Method Detail

updateUI

protected void updateUI()

Resizes and repaints this component and the associated heading component.

repaintAll

protected void repaintAll()

Repaints this component and the associated heading component.

getModel

public PherogramComponentModel getModel()

Description copied from interface: PherogramComponent

Returns the model providing the base call sequence, the trace curves and the cut positions.

Specified by:

getModel in interface PherogramComponent

Returns:

the model instance or null if not model has been specified yet

setModel

public void setModel(PherogramComponentModel model)

getVerticalScale

public double getVerticalScale()

Specified by:

getVerticalScale in interface PherogramComponent

setVerticalScale

public void setVerticalScale(double value)

Description copied from interface: PherogramComponent

Sets the horizontal zoom factor that shall used for displaying the trace curves.

Specified by:

setVerticalScale in interface PherogramComponent

Parameters:

value - the new zoom factor (must be greater than zero)

getHorizontalScale

public double getHorizontalScale()

setHorizontalScale

public void setHorizontalScale(double horizontalScale)

getFormats

public PherogramFormats getFormats()

Description copied from interface: PherogramComponent

Returns the format object that is used to paint the displayed pherogram.

Specified by:

getFormats in interface PherogramComponent

Returns:

the layout object containing color and font definitions

getPainter

public PherogramPainter getPainter()

getHeadingView

public PherogramHeadingView getHeadingView()

setHeadingView

public void setHeadingView(PherogramHeadingView headingView)

Use this method to specify the heading component used together with this component. Only if the heading component is registered here it will automatically be updated if propertied of this class change.

Parameters:

headingView - the heading component used together with this instance

getWidth

public int getWidth()

getSize

public java.awt.Dimension getSize()

Overrides:

getSize in class TICComponent

calculatePaintRange

protected SimpleSequenceInterval calculatePaintRange(TICPaintEvent e)

paint

public void paint(TICPaintEvent e)

Overrides:

paint in class TICComponent