See: Description
Interface | Description |
---|---|
JPhyloIOEvent |
This interface is implemented by all events generated by implementations of
JPhyloIOEventReader . |
LinkedIDEvent |
Interface to be implemented by event objects that can link previous events by their ID.
|
Class | Description |
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CharacterDefinitionEvent |
Event that indicates a defined character (alignment column).
|
CharacterSetIntervalEvent |
Event that indicates that new information on a character set has been read.
|
CommentEvent |
Event that indicates that a comment has been parsed at the current position or within the data the last
non-comment event has been parsed from.
|
ConcreteJPhyloIOEvent |
Implements basic functionality for
JPhyloIOEvent s. |
ContinuedEvent |
Base class for events that have a content that may be split across separate subsequent events, if it is large.
|
EdgeEvent |
Event indicating an edge in a tree or network.
|
LabeledEvent | |
LabeledIDEvent |
Event that indicate data objects that carry an unique ID and a label.
|
LinkedLabeledIDEvent |
Instances of this class model data elements with an ID and an optional label, that link another data
element in a phylogenetic document.
|
NodeEvent |
Event indicating a node in a tree or network.
|
PartEndEvent |
Indicates the end of a part of a sequence or character set definition.
|
SequenceTokensEvent |
Indicates that one or more sequence tokens have been read from an alignment.
|
SetElementEvent |
Event object that models an ID-based link to an object that is contained in set.
|
SingleSequenceTokenEvent | |
SingleTokenDefinitionEvent |
Event that indicates the definition of a single new valid token that could be contained in a sequence
of the current alignment.
|
TokenSetDefinitionEvent |
Event that indicates that a (predefined) definition of a character state set was found in the parsed file.
|
UnknownCommandEvent |
Event to be fired, if an unknown command was found (e.g.
|