info.bioinfweb.jphyloio.formats.mega

Interface MEGAConstants

All Known Implementing Classes:

MEGAEventReader, MEGAFactory

public interface MEGAConstants

Field Summary

Fields

Modifier and Type	Field and Description
static char	COMMAND_END
static java.lang.String	COMMAND_NAME_DESCRIPTION
static java.lang.String	COMMAND_NAME_DOMAIN
static java.lang.String	COMMAND_NAME_FORMAT
static java.lang.String	COMMAND_NAME_GENE
static java.lang.String	COMMAND_NAME_LABEL
static java.lang.String	COMMAND_NAME_TITLE
static char	COMMAND_START
static char	COMMENT_END
static char	COMMENT_START
static char	DEFAULT_LABEL_CHAR
static java.lang.String	FIRST_LINE
static java.lang.String	FORMAT_SUBCOMMAND_DATA_FORMAT
static java.lang.String	FORMAT_SUBCOMMAND_DATA_TYPE
static java.lang.String	FORMAT_SUBCOMMAND_IDENTICAL
static java.lang.String	FORMAT_SUBCOMMAND_INDEL
static java.lang.String	FORMAT_SUBCOMMAND_MISSING
static java.lang.String	FORMAT_SUBCOMMAND_NSITES
static java.lang.String	FORMAT_SUBCOMMAND_NTAXA
static java.lang.String	FORMAT_VALUE_DNA_DATA_TYPE
static java.lang.String	FORMAT_VALUE_INTERLEAVED_DATA_FORMAT
static java.lang.String	FORMAT_VALUE_NUCLEOTIDE_DATA_TYPE
static java.lang.String	FORMAT_VALUE_PROTEIN_DATA_TYPE
static java.lang.String	FORMAT_VALUE_RNA_DATA_TYPE
static java.lang.String	LABEL_CHAR_SET_ID
static java.lang.String	MEGA_FORMAT_NAME
static java.lang.String	MEGA_NAMESPACE_PREFIX
static java.lang.String	MEGA_PREDICATE_NAMESPACE
static char	SEUQUENCE_START

Field Detail

MEGA_FORMAT_NAME

static final java.lang.String MEGA_FORMAT_NAME

See Also:

Constant Field Values

FIRST_LINE

static final java.lang.String FIRST_LINE

See Also:

Constant Field Values

COMMAND_END

static final char COMMAND_END

See Also:

Constant Field Values

COMMAND_START

static final char COMMAND_START

See Also:

Constant Field Values

SEUQUENCE_START

static final char SEUQUENCE_START

See Also:

Constant Field Values

COMMENT_START

static final char COMMENT_START

See Also:

Constant Field Values

COMMENT_END

static final char COMMENT_END

See Also:

Constant Field Values

DEFAULT_LABEL_CHAR

static final char DEFAULT_LABEL_CHAR

See Also:

Constant Field Values

COMMAND_NAME_TITLE

static final java.lang.String COMMAND_NAME_TITLE

See Also:

Constant Field Values

COMMAND_NAME_DESCRIPTION

static final java.lang.String COMMAND_NAME_DESCRIPTION

See Also:

Constant Field Values

COMMAND_NAME_FORMAT

static final java.lang.String COMMAND_NAME_FORMAT

See Also:

Constant Field Values

COMMAND_NAME_LABEL

static final java.lang.String COMMAND_NAME_LABEL

See Also:

Constant Field Values

COMMAND_NAME_GENE

static final java.lang.String COMMAND_NAME_GENE

See Also:

Constant Field Values

COMMAND_NAME_DOMAIN

static final java.lang.String COMMAND_NAME_DOMAIN

See Also:

Constant Field Values

FORMAT_SUBCOMMAND_NTAXA

static final java.lang.String FORMAT_SUBCOMMAND_NTAXA

See Also:

Constant Field Values

FORMAT_SUBCOMMAND_NSITES

static final java.lang.String FORMAT_SUBCOMMAND_NSITES

See Also:

Constant Field Values

FORMAT_SUBCOMMAND_DATA_TYPE

static final java.lang.String FORMAT_SUBCOMMAND_DATA_TYPE

See Also:

Constant Field Values

FORMAT_SUBCOMMAND_MISSING

static final java.lang.String FORMAT_SUBCOMMAND_MISSING

See Also:

Constant Field Values

FORMAT_SUBCOMMAND_INDEL

static final java.lang.String FORMAT_SUBCOMMAND_INDEL

See Also:

Constant Field Values

FORMAT_SUBCOMMAND_IDENTICAL

static final java.lang.String FORMAT_SUBCOMMAND_IDENTICAL

See Also:

Constant Field Values

FORMAT_SUBCOMMAND_DATA_FORMAT

static final java.lang.String FORMAT_SUBCOMMAND_DATA_FORMAT

See Also:

Constant Field Values

FORMAT_VALUE_NUCLEOTIDE_DATA_TYPE

static final java.lang.String FORMAT_VALUE_NUCLEOTIDE_DATA_TYPE

See Also:

Constant Field Values

FORMAT_VALUE_DNA_DATA_TYPE

static final java.lang.String FORMAT_VALUE_DNA_DATA_TYPE

See Also:

Constant Field Values

FORMAT_VALUE_RNA_DATA_TYPE

static final java.lang.String FORMAT_VALUE_RNA_DATA_TYPE

See Also:

Constant Field Values

FORMAT_VALUE_PROTEIN_DATA_TYPE

static final java.lang.String FORMAT_VALUE_PROTEIN_DATA_TYPE

See Also:

Constant Field Values

FORMAT_VALUE_INTERLEAVED_DATA_FORMAT

static final java.lang.String FORMAT_VALUE_INTERLEAVED_DATA_FORMAT

See Also:

Constant Field Values

LABEL_CHAR_SET_ID

static final java.lang.String LABEL_CHAR_SET_ID

See Also:

Constant Field Values

MEGA_NAMESPACE_PREFIX

static final java.lang.String MEGA_NAMESPACE_PREFIX

See Also:

Constant Field Values

MEGA_PREDICATE_NAMESPACE

static final java.lang.String MEGA_PREDICATE_NAMESPACE

See Also:

Constant Field Values