Uses of Interface
info.bioinfweb.jphyloio.formats.nexml.NeXMLConstants

Packages that use NeXMLConstants

Package	Description
info.bioinfweb.jphyloio.dataadapters.implementations	Contains some basic (abstract) implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.formats.nexml	Contains classes for reading from and writing to streams/files in NeXML format.
info.bioinfweb.jphyloio.formats.nexml.elementreader	Contains implementations of XMLElementReader used by NeXMLEventReader.
info.bioinfweb.jphyloio.formats.nexml.receivers	Contains implementations for JPhyloIOEventReceiver necessary for writing NeXML.

Uses of NeXMLConstants in info.bioinfweb.jphyloio.dataadapters.implementations

Classes in info.bioinfweb.jphyloio.dataadapters.implementations that implement NeXMLConstants

Modifier and Type	Class and Description
class	UndefinedOTUListDataAdapter

Uses of NeXMLConstants in info.bioinfweb.jphyloio.formats.nexml

Classes in info.bioinfweb.jphyloio.formats.nexml that implement NeXMLConstants

Modifier and Type	Class and Description
class	NeXMLEventReader An event reader for the NeXML format.
class	NeXMLEventWriter Event based writer for the NeXML format.
class	NeXMLFactory Reader and writer factory for the NeXML format.
class	NeXMLWriterAlignmentInformation Class that is used by NeXMLEventWriter to store information about an alignment.
class	NeXMLWriterStreamDataProvider Stores data that shall be shared among different implementations of AbstractNeXMLDataReceiver and the writer instance that uses them.

Uses of NeXMLConstants in info.bioinfweb.jphyloio.formats.nexml.elementreader

Classes in info.bioinfweb.jphyloio.formats.nexml.elementreader that implement NeXMLConstants

Modifier and Type	Class and Description
class	AbstractIDLinkSetElementReader Element reader for NeXML sets that are represented as a sequence of EventContentType.SET_ELEMENT events.
class	AbstractNeXMLElementReader Processes a NeXML tag without any of its subelements.
class	AbstractSetElementReader Abstract element reader that processes NeXML set tags that contain one or more attributes of the type xs:IDREFS.
class	NeXMLMetaEndElementReader Abstract element reader that processes end elements of NeXML meta tags.
class	NeXMLMetaStartElementReader Abstract element reader that processes start elements of NeXML meta tags.
class	NeXMLSetEndElementReader Abstract element reader that processes end elements of NeXML set tags.

Uses of NeXMLConstants in info.bioinfweb.jphyloio.formats.nexml.receivers

Classes in info.bioinfweb.jphyloio.formats.nexml.receivers that implement NeXMLConstants

Modifier and Type	Class and Description
class	AbstractNeXMLDataReceiver Implements basic functionality for event receivers writing NeXML.
class	AbstractNeXMLDataReceiverMixin Provides a set of static methods to be used as static imports when needed across multiple NeXML data receivers.
class	NeXMLAttributeMetadataReceiver Receiver that is used to store the contents of metadata events with certain predicates in a map to be written as attribute/value pairs later on.
class	NeXMLCharacterSetEventReceiver Receiver that ensures no other events than character set intervals are contained in a character set.
class	NeXMLCollectCharSetDataReceiver Receiver that collects the IDs of character set elements.
class	NeXMLCollectNamespaceReceiver Receiver that collects namespace definitions occurring in document metadata by calling the according methods of the AbstractNeXMLDataReceiverMixin.
class	NeXMLCollectSequenceDataReceiver Receiver that collects information about the sequence tokens contained in a document.
class	NeXMLCollectSetMetadataReceiver Receiver that collects information about sets contained in a document.
class	NeXMLCollectTokenSetDefinitionDataReceiver Receiver that is used to check the contents of a token set.
class	NeXMLHandleSequenceDataReceiver General implementation of a receiver that processes sequence tokens.
class	NeXMLIgnoreCertainMetadataReceiver Receiver that is able to ignore metadata events with certain predicates, e.g.
class	NeXMLMetaDataReceiver This receiver should be used if no other elements than meta are expected under an element.
class	NeXMLMolecularDataTokenDefinitionReceiver Receiver that writes token definitions for molecular data, such as DNA, RNA or protein sequences.
class	NeXMLOnlyWriteMetaDataReceiver Receiver that writes meta data but ignores other events that were processed previously.
class	NeXMLPredicateMetaReceiver General implementation of a receiver that allows to process metadata events with certain predicates in a special way.
class	NeXMLSequenceTokensReceiver Receiver that is used to write sequence tokens.
class	NeXMLTokenSetEventReceiver Receiver that is used to write token sets.