Uses of Class
info.bioinfweb.jphyloio.formats.nexml.NeXMLReaderStreamDataProvider

Packages that use NeXMLReaderStreamDataProvider

Package	Description
info.bioinfweb.jphyloio.formats.nexml	Contains classes for reading from and writing to streams/files in NeXML format.
info.bioinfweb.jphyloio.formats.nexml.elementreader	Contains implementations of XMLElementReader used by NeXMLEventReader.

Uses of NeXMLReaderStreamDataProvider in info.bioinfweb.jphyloio.formats.nexml

Methods in info.bioinfweb.jphyloio.formats.nexml that return NeXMLReaderStreamDataProvider

Modifier and Type	Method and Description
protected NeXMLReaderStreamDataProvider	NeXMLEventReader.createStreamDataProvider()

Methods in info.bioinfweb.jphyloio.formats.nexml that return types with arguments of type NeXMLReaderStreamDataProvider

Modifier and Type	Method and Description
protected XMLElementReader<NeXMLReaderStreamDataProvider>	NeXMLEventReader.getElementReader(javax.xml.namespace.QName parentTag, javax.xml.namespace.QName elementTag, int eventType)

Uses of NeXMLReaderStreamDataProvider in info.bioinfweb.jphyloio.formats.nexml.elementreader

Methods in info.bioinfweb.jphyloio.formats.nexml.elementreader with parameters of type NeXMLReaderStreamDataProvider

Modifier and Type	Method and Description
protected void	AbstractNeXMLElementReader.createIntervalEvents(NeXMLReaderStreamDataProvider streamDataProvider, java.lang.String[] charIDs) Creates a series of CharacterSetIntervalEvents from an array of IDs referencing CharacterDefinitionEvents and adds them to the current event collection.
protected AbstractNeXMLElementReader.LabeledIDEventInformation	AbstractNeXMLElementReader.getLabeledIDEventInformation(NeXMLReaderStreamDataProvider streamDataProvider, javax.xml.stream.events.StartElement element) Obtains information about the ID and label associated with a StartElement by reading its attributes.
protected AbstractNeXMLElementReader.OTUorOTUsEventInformation	AbstractNeXMLElementReader.getOTUorOTUsEventInformation(NeXMLReaderStreamDataProvider streamDataProvider, javax.xml.stream.events.StartElement element) Obtains information about the ID, label and linked OTU or OTU list associated with a StartElement by reading its attributes.
protected void	AbstractIDLinkSetElementReader.processIDs(NeXMLReaderStreamDataProvider streamDataProvider, java.lang.String[] linkedIDs, javax.xml.namespace.QName attributeName)
protected abstract void	AbstractSetElementReader.processIDs(NeXMLReaderStreamDataProvider streamDataProvider, java.lang.String[] linkedIDs, javax.xml.namespace.QName attribute) Method that is called to process a list of IDs that has been found in an according attribute of the tag processed by this instance.
void	AbstractSetElementReader.readEvent(NeXMLReaderStreamDataProvider streamDataProvider, javax.xml.stream.events.XMLEvent event)
void	NeXMLMetaEndElementReader.readEvent(NeXMLReaderStreamDataProvider streamDataProvider, javax.xml.stream.events.XMLEvent event)
void	NeXMLMetaStartElementReader.readEvent(NeXMLReaderStreamDataProvider streamDataProvider, javax.xml.stream.events.XMLEvent event)
void	NeXMLSetEndElementReader.readEvent(NeXMLReaderStreamDataProvider streamDataProvider, javax.xml.stream.events.XMLEvent event)
void	NeXMLStartDocumentElementReader.readEvent(NeXMLReaderStreamDataProvider streamDataProvider, javax.xml.stream.events.XMLEvent event)
protected java.util.List<java.lang.String>	AbstractNeXMLElementReader.readSequence(NeXMLReaderStreamDataProvider streamDataProvider, java.lang.String sequence, TokenTranslationStrategy translateTokens) Parses a sequence string to a list of single tokens by using the provided TokenTranslationStrategy.