| Package | Description | 
|---|---|
| info.bioinfweb.jphyloio | The main package of JPhyloIO. | 
| info.bioinfweb.jphyloio.formats.nexml | Contains classes for reading from and writing to streams/files in NeXML format. | 
| info.bioinfweb.jphyloio.formats.nexml.elementreader | Contains implementations of  XMLElementReaderused byNeXMLEventReader. | 
| Modifier and Type | Method and Description | 
|---|---|
| TokenTranslationStrategy | ReadWriteParameterMap. getTranslateTokens() | 
| Modifier and Type | Method and Description | 
|---|---|
| TokenTranslationStrategy | NeXMLEventReader. getTranslateTokens() | 
| static TokenTranslationStrategy | TokenTranslationStrategy. valueOf(java.lang.String name)Returns the enum constant of this type with the specified name. | 
| static TokenTranslationStrategy[] | TokenTranslationStrategy. values()Returns an array containing the constants of this enum type, in
the order they are declared. | 
| Modifier and Type | Method and Description | 
|---|---|
| protected java.util.List<java.lang.String> | AbstractNeXMLElementReader. readSequence(NeXMLReaderStreamDataProvider streamDataProvider,
            java.lang.String sequence,
            TokenTranslationStrategy translateTokens)Parses a sequence string to a list of single tokens by using the provided  TokenTranslationStrategy. |