Uses of Class
info.bioinfweb.jphyloio.formats.nexus.commandreaders.AbstractNexusCommandEventReader

Packages that use AbstractNexusCommandEventReader

Package	Description
info.bioinfweb.jphyloio.formats.nexus.commandreaders	Contains general classes for reading Nexus commands.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.all	Contains implementations of NexusCommandEventReader for commands that are valid in all Nexus blocks.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters	Contains classes for reading Nexus commands in a CHARACTERS, UNALIGNED or DATA block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets	Contains classes for reading Nexus commands in a SETS block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa	Contains classes for reading Nexus commands in a TAXA block.
info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees	Contains classes for reading Nexus commands in a TREES block.

Uses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders

Subclasses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders

Modifier and Type	Class and Description
class	AbstractKeyValueCommandReader
class	DefaultCommandReader Default Nexus command reader for all unsupported Nexus commands.

Uses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all

Subclasses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.all

Modifier and Type	Class and Description
class	LinkReader Reads the LINK command of a Nexus block and stores the links in the shared information map of the stream data provider under the key NexusReaderStreamDataProvider.INFO_KEY_BLOCK_LINKS.
class	TitleReader Reads the TITLE command of a Nexus block and stores the title in the shared information map of the stream data provider under the key NexusReaderStreamDataProvider.INFO_KEY_BLOCK_TITLE.

Uses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters

Subclasses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters

Modifier and Type	Class and Description
class	AbstractCharLabelsReader Implements shared functionality for Nexus command readers that process character (alignment column) definitions.
class	CharLabelsReader Nexus reader for the CHARLABELS command that produces CharacterDefinitionEvents.
class	CharStateLabelsReader Nexus reader for the CHARSTATELABELS command that produces CharacterDefinitionEvents.
class	DimensionsReader
class	FormatReader Parser for the Format command in a Characters, Unaligned or Data block.
class	MatrixReader Parser for the MATRIX command in a CHARACTERS, UNALIGNED or DATA block.

Uses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets

Subclasses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.sets

Modifier and Type	Class and Description
class	AbstractNexusSetReader General reader implementation to read the Nexus commands that define different kinds of sets.
class	CharSetReader Parser for the CHARSET command in the SETS block.
class	IDBasedSetsReader Base class for all Nexus readers that create set event streams that consist of SetElementEvents.
class	TaxSetReader
class	TreeSetReader

Uses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa

Subclasses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.taxa

Modifier and Type	Class and Description
class	TaxLabelsReader

Uses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees

Subclasses of AbstractNexusCommandEventReader in info.bioinfweb.jphyloio.formats.nexus.commandreaders.trees

Modifier and Type	Class and Description
class	ENewickNetworkReader Nexus command reader for the custom NETWORK command.
class	TranslateReader
class	TreeReader