info.bioinfweb.jphyloio.formats.pde

Interface PDEConstants

All Known Implementing Classes:

PDEEventReader, PDEFactory

public interface PDEConstants

Defines constants necessary to read PDE files.

Author:

Sarah Wiechers

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	AMINO_TYPE
static javax.xml.namespace.QName	ATTR_ALIGNMENT_LENGTH
static javax.xml.namespace.QName	ATTR_CHARSET_LABEL
static javax.xml.namespace.QName	ATTR_COLOR
static javax.xml.namespace.QName	ATTR_DATATYPE
static javax.xml.namespace.QName	ATTR_ID
static javax.xml.namespace.QName	ATTR_SEQUENCE_COUNT
static javax.xml.namespace.QName	ATTR_SEQUENCE_INDEX
static javax.xml.namespace.QName	ATTR_VERSION
static javax.xml.namespace.QName	ATTR_VISIBILITY
static java.lang.String	DNA_TYPE
static int	FIRST_CUSTOM_META_ID
static int	META_ID_ACCESS_NUMBER
static int	META_ID_COMMENT
static int	META_ID_LINKED_FILE
static int	META_ID_SEQUENCE_LABEL
static java.lang.String	META_TYPE_FILE
static java.lang.String	META_TYPE_NUMBER
static java.lang.String	META_TYPE_STRING
static java.lang.String	PDE_FORMAT_NAME
static java.lang.String	PDE_NAMESPACE_PREFIX
static java.lang.String	PDE_PREDICATE_NAMESPACE
static javax.xml.namespace.QName	PREDICATE_ACCESS_NUMBER
static javax.xml.namespace.QName	PREDICATE_CHARSET_COLOR
static javax.xml.namespace.QName	PREDICATE_CHARSET_VISIBILITY
static javax.xml.namespace.QName	PREDICATE_COMMENT
static javax.xml.namespace.QName	PREDICATE_DESCRIPTION
static javax.xml.namespace.QName	PREDICATE_LINKED_FILE
static java.lang.String	SEQUENCE_END
static javax.xml.namespace.QName	TAG_ALIGNMENT
static javax.xml.namespace.QName	TAG_BLOCK
static javax.xml.namespace.QName	TAG_CHARSET
static javax.xml.namespace.QName	TAG_CHARSETS
static javax.xml.namespace.QName	TAG_DESCRIPTION
static javax.xml.namespace.QName	TAG_HEADER
static javax.xml.namespace.QName	TAG_MATRIX
static javax.xml.namespace.QName	TAG_META_TYPE_DEFINITIONS
static javax.xml.namespace.QName	TAG_ROOT
static javax.xml.namespace.QName	TAG_SEQUENCE_INFORMATION
static javax.xml.namespace.QName	TAG_SEQUENCE_META_INFORMATION
static java.lang.String	UNKNOWN_CHARS

Field Detail

PDE_FORMAT_NAME

static final java.lang.String PDE_FORMAT_NAME

See Also:

Constant Field Values

TAG_ROOT

static final javax.xml.namespace.QName TAG_ROOT

TAG_DESCRIPTION

static final javax.xml.namespace.QName TAG_DESCRIPTION

TAG_ALIGNMENT

static final javax.xml.namespace.QName TAG_ALIGNMENT

TAG_HEADER

static final javax.xml.namespace.QName TAG_HEADER

TAG_META_TYPE_DEFINITIONS

static final javax.xml.namespace.QName TAG_META_TYPE_DEFINITIONS

TAG_SEQUENCE_INFORMATION

static final javax.xml.namespace.QName TAG_SEQUENCE_INFORMATION

TAG_SEQUENCE_META_INFORMATION

static final javax.xml.namespace.QName TAG_SEQUENCE_META_INFORMATION

TAG_MATRIX

static final javax.xml.namespace.QName TAG_MATRIX

TAG_BLOCK

static final javax.xml.namespace.QName TAG_BLOCK

TAG_CHARSETS

static final javax.xml.namespace.QName TAG_CHARSETS

TAG_CHARSET

static final javax.xml.namespace.QName TAG_CHARSET

ATTR_DATATYPE

static final javax.xml.namespace.QName ATTR_DATATYPE

ATTR_ALIGNMENT_LENGTH

static final javax.xml.namespace.QName ATTR_ALIGNMENT_LENGTH

ATTR_SEQUENCE_COUNT

static final javax.xml.namespace.QName ATTR_SEQUENCE_COUNT

ATTR_SEQUENCE_INDEX

static final javax.xml.namespace.QName ATTR_SEQUENCE_INDEX

ATTR_ID

static final javax.xml.namespace.QName ATTR_ID

ATTR_VERSION

static final javax.xml.namespace.QName ATTR_VERSION

ATTR_CHARSET_LABEL

static final javax.xml.namespace.QName ATTR_CHARSET_LABEL

ATTR_VISIBILITY

static final javax.xml.namespace.QName ATTR_VISIBILITY

ATTR_COLOR

static final javax.xml.namespace.QName ATTR_COLOR

META_TYPE_STRING

static final java.lang.String META_TYPE_STRING

See Also:

Constant Field Values

META_TYPE_NUMBER

static final java.lang.String META_TYPE_NUMBER

See Also:

Constant Field Values

META_TYPE_FILE

static final java.lang.String META_TYPE_FILE

See Also:

Constant Field Values

DNA_TYPE

static final java.lang.String DNA_TYPE

See Also:

Constant Field Values

AMINO_TYPE

static final java.lang.String AMINO_TYPE

See Also:

Constant Field Values

SEQUENCE_END

static final java.lang.String SEQUENCE_END

See Also:

Constant Field Values

UNKNOWN_CHARS

static final java.lang.String UNKNOWN_CHARS

See Also:

Constant Field Values

META_ID_SEQUENCE_LABEL

static final int META_ID_SEQUENCE_LABEL

See Also:

Constant Field Values

META_ID_LINKED_FILE

static final int META_ID_LINKED_FILE

See Also:

Constant Field Values

META_ID_ACCESS_NUMBER

static final int META_ID_ACCESS_NUMBER

See Also:

Constant Field Values

META_ID_COMMENT

static final int META_ID_COMMENT

See Also:

Constant Field Values

FIRST_CUSTOM_META_ID

static final int FIRST_CUSTOM_META_ID

See Also:

Constant Field Values

PDE_NAMESPACE_PREFIX

static final java.lang.String PDE_NAMESPACE_PREFIX

See Also:

Constant Field Values

PDE_PREDICATE_NAMESPACE

static final java.lang.String PDE_PREDICATE_NAMESPACE

See Also:

Constant Field Values

PREDICATE_LINKED_FILE

static final javax.xml.namespace.QName PREDICATE_LINKED_FILE

PREDICATE_ACCESS_NUMBER

static final javax.xml.namespace.QName PREDICATE_ACCESS_NUMBER

PREDICATE_COMMENT

static final javax.xml.namespace.QName PREDICATE_COMMENT

PREDICATE_DESCRIPTION

static final javax.xml.namespace.QName PREDICATE_DESCRIPTION

PREDICATE_CHARSET_VISIBILITY

static final javax.xml.namespace.QName PREDICATE_CHARSET_VISIBILITY

PREDICATE_CHARSET_COLOR

static final javax.xml.namespace.QName PREDICATE_CHARSET_COLOR