info.bioinfweb.jphyloio.formats.phylip

Interface PhylipConstants

All Known Implementing Classes:

AbstractPhylipEventReader, AbstractPhylipFactory, PhylipEventReader, PhylipEventWriter, PhylipFactory, SequentialPhylipEventReader, SequentialPhylipFactory

public interface PhylipConstants

Constants to be used by Phylip readers and writers.

Since:

0.0.0

Author:

Ben Stöver

Field Summary

Fields

Modifier and Type	Field and Description
static int	DEFAULT_NAME_LENGTH The default maximum length of sequence names written to the format.
static java.lang.String	PHYLIP_FORMAT_NAME
static java.lang.String	PREMATURE_NAME_END_CHARACTER
static java.util.regex.Pattern	RELAXED_PHYLIP_NAME_PATTERN
static java.lang.String	SEQUENTIAL_PHYLIP_FORMAT_NAME

Field Detail

PHYLIP_FORMAT_NAME

static final java.lang.String PHYLIP_FORMAT_NAME

See Also:

Constant Field Values

SEQUENTIAL_PHYLIP_FORMAT_NAME

static final java.lang.String SEQUENTIAL_PHYLIP_FORMAT_NAME

See Also:

Constant Field Values

DEFAULT_NAME_LENGTH

static final int DEFAULT_NAME_LENGTH

The default maximum length of sequence names written to the format.

See Also:

PhylipEventWriter, ReadWriteParameterNames.KEY_MAXIMUM_NAME_LENGTH, Constant Field Values

PREMATURE_NAME_END_CHARACTER

static final java.lang.String PREMATURE_NAME_END_CHARACTER

See Also:

Constant Field Values

RELAXED_PHYLIP_NAME_PATTERN

static final java.util.regex.Pattern RELAXED_PHYLIP_NAME_PATTERN