info.bioinfweb.jphyloio.formats.text

Class AbstractTextEventWriter<P extends TextWriterStreamDataProvider<? extends AbstractTextEventWriter<P>>>

java.lang.Object

info.bioinfweb.jphyloio.AbstractEventWriter<P>

info.bioinfweb.jphyloio.formats.text.AbstractTextEventWriter<P>

All Implemented Interfaces:

JPhyloIOEventWriter, JPhyloIOFormatSpecificObject

Direct Known Subclasses:

AbstractSingleMatrixEventWriter, NewickEventWriter, NexusEventWriter

public abstract class AbstractTextEventWriter<P extends TextWriterStreamDataProvider<? extends AbstractTextEventWriter<P>>>
extends AbstractEventWriter<P>

Nested Class Summary

Nested classes/interfaces inherited from class info.bioinfweb.jphyloio.AbstractEventWriter

AbstractEventWriter.NoEditUniqueLabelHandler, AbstractEventWriter.UniqueLabelHandler

Field Summary

Fields inherited from class info.bioinfweb.jphyloio.AbstractEventWriter

EDITED_LABEL_SEPARATOR

Constructor Summary

Constructors

Constructor and Description
AbstractTextEventWriter()

Method Summary

Modifier and Type	Method and Description
protected void	doWriteDocument(DocumentDataAdapter document, java.io.Writer writer, ReadWriteParameterMap parameters)
protected java.io.Writer	getWriter()

Methods inherited from class info.bioinfweb.jphyloio.AbstractEventWriter

createStreamDataProvider, createUniqueLabel, createUniqueLabel, createUniqueLabel, createUniqueLinkedOTULabel, decreaseIndention, determineMaxSequenceLength, extendSequence, getFileStartInfo, getIndention, getLabeledIDName, getLinkedOTUNameOTUFirst, getLinkedOTUNameOwnFirst, getReferencedOTUList, getStreamDataProvider, increaseIndention, logIngnoredOTULists, writeDocument, writeDocument, writeDocument, writeLineBreak, writeLineStart

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface info.bioinfweb.jphyloio.JPhyloIOFormatSpecificObject

getFormatID

Constructor Detail

AbstractTextEventWriter

public AbstractTextEventWriter()

Method Detail

getWriter

protected java.io.Writer getWriter()

doWriteDocument

protected void doWriteDocument(DocumentDataAdapter document,
                               java.io.Writer writer,
                               ReadWriteParameterMap parameters)
                        throws java.io.IOException

Specified by:

doWriteDocument in class AbstractEventWriter<P extends TextWriterStreamDataProvider<? extends AbstractTextEventWriter<P>>>

Throws:

java.io.IOException