Package | Description |
---|---|
info.bioinfweb.jphyloio.formats.nexus |
Contains classes for reading from and writing to streams/files in Nexus format.
|
info.bioinfweb.jphyloio.formats.nexus.commandreaders |
Contains general classes for reading Nexus commands.
|
info.bioinfweb.jphyloio.formats.nexus.commandreaders.all |
Contains implementations of
NexusCommandEventReader
for commands that are valid in all Nexus blocks. |
info.bioinfweb.jphyloio.formats.nexus.commandreaders.characters |
Contains classes for reading Nexus commands in a
CHARACTERS , UNALIGNED or DATA
block. |
info.bioinfweb.jphyloio.formats.text |
Contains classes implementing shared functionality for reading from and writing to streams/files in text formats.
|
Modifier and Type | Method and Description |
---|---|
protected KeyValueInformation |
NexusEventReader.readKeyValueMetaInformation() |
KeyValueInformation |
NexusReaderStreamDataProvider.readKeyValueMetaInformation() |
Modifier and Type | Method and Description |
---|---|
protected abstract boolean |
AbstractKeyValueCommandReader.processSubcommand(KeyValueInformation info)
Inherited classes should implement this method by adding one or more events to the queue, which have
been generated from the specified key value pair.
|
Modifier and Type | Method and Description |
---|---|
protected boolean |
LinkReader.processSubcommand(KeyValueInformation info) |
Modifier and Type | Method and Description |
---|---|
protected boolean |
DimensionsReader.processSubcommand(KeyValueInformation info) |
protected boolean |
FormatReader.processSubcommand(KeyValueInformation info) |
Modifier and Type | Method and Description |
---|---|
protected KeyValueInformation |
AbstractTextEventReader.readKeyValueInformation(char commandEnd,
char commentStart,
char commentEnd,
char keyValueSeparator) |