Package | Description |
---|---|
info.bioinfweb.jphyloio.formats.nexml.receivers |
Contains implementations for
JPhyloIOEventReceiver necessary for writing
NeXML. |
info.bioinfweb.jphyloio.formats.phyloxml.receivers |
Contains implementations for
JPhyloIOEventReceiver necessary for writing
PhyloXML. |
Modifier and Type | Class and Description |
---|---|
class |
AbstractNeXMLDataReceiver
Implements basic functionality for event receivers writing NeXML.
|
class |
NeXMLAttributeMetadataReceiver
Receiver that is used to store the contents of metadata events with certain predicates in a map to be written
as attribute/value pairs later on.
|
class |
NeXMLCharacterSetEventReceiver
Receiver that ensures no other events than character set intervals are contained in a character set.
|
class |
NeXMLCollectCharSetDataReceiver
Receiver that collects the IDs of character set elements.
|
class |
NeXMLCollectNamespaceReceiver
Receiver that collects namespace definitions occurring in document metadata by calling the according methods of
the
AbstractNeXMLDataReceiverMixin . |
class |
NeXMLCollectSetMetadataReceiver
Receiver that collects information about sets contained in a document.
|
class |
NeXMLCollectTokenSetDefinitionDataReceiver
Receiver that is used to check the contents of a token set.
|
class |
NeXMLIgnoreCertainMetadataReceiver
Receiver that is able to ignore metadata events with certain predicates, e.g.
|
class |
NeXMLMetaDataReceiver
This receiver should be used if no other elements than meta are expected under an element.
|
class |
NeXMLMolecularDataTokenDefinitionReceiver
Receiver that writes token definitions for molecular data, such as DNA, RNA or protein sequences.
|
class |
NeXMLOnlyWriteMetaDataReceiver
Receiver that writes meta data but ignores other events that were processed previously.
|
class |
NeXMLPredicateMetaReceiver
General implementation of a receiver that allows to process metadata events with certain predicates in a special way.
|
class |
NeXMLTokenSetEventReceiver
Receiver that is used to write token sets.
|
Modifier and Type | Class and Description |
---|---|
class |
PhyloXMLCollectMetadataDataReceiver
Receiver that is used to collect information from meta events (e.g.
|
class |
PhyloXMLMetaDataReceiver
Receiver that implements a general strategy of writing metadata to a PhyloXML document.
|
class |
PhyloXMLOnlyCustomXMLDataReceiver
Receiver, that writes only custom XML, e.g nested under
document . |
class |
PhyloXMLPropertyMetadataReceiver
This receiver is used to write the contents of meta events to a document, if their predicates indicate
that they contain information about a PhyloXML
property tag. |
class |
PhyloXMLSpecificPredicatesDataReceiver
Receiver that is used to translate between meta events with certain predicates indicating
they contain information about a PhyloXML tag and the actual tag.
|