Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DIVIDER_WIDTH |
2 |
public static final int |
MIN_PART_AREA_HEIGHT |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
BORDER_WIDTH |
2 |
public static final double |
RECALCULATE_VALUE |
-1.0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
DEFAULT_CURSOR_LINE_WIDTH |
2.0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
NO_SELECTION |
-1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
DEFAULT_HEIGHT |
14.0 |
public static final double |
DEFAULT_WIDTH |
10.0 |
public static final float |
FONT_SIZE_FACTOR |
0.699999988079071f |
public static final int |
MIN_FONT_SIZE |
4 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
INITIAL_LIST_SIZE |
8 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final float |
DEFAULT_HEIGHT_FACTOR |
3.0f |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
BORDER_FRACTION |
0.17 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
COLOR_METADATA_ID_SUFFIX |
"Col" |
public static final java.lang.String |
COLOR_METADATA_LABEL |
"Color" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_HEIGHT_FACTOR |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final double |
DASH_LENGTH_FACTOR |
0.30000001192092896 |
public static final int |
DEFAULT_FIRST_INDEX |
1 |
public static final double |
LABEL_LEFT_DISTANCE_FACTOR |
0.20000000298023224 |
public static final double |
LABEL_TOP_DISTANCE_FACTOR |
0.550000011920929 |
public static final double |
LABELED_DASH_LENGTH_FACTOR |
1.0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
KEY_ALIGNMENT_ID |
"info.bioinfweb.libralign.alignmentModelFactory.alignmentID" |
public static final java.lang.String |
KEY_ALIGNMENT_LABEL |
"info.bioinfweb.libralign.alignmentModelFactory.alignmentLabel" |
public static final java.lang.String |
KEY_CHARACTER_STATE_COUNT |
"info.bioinfweb.libralign.alignmentModelFactory.charStateCount" |
public static final java.lang.String |
KEY_CHARACTER_STATE_SET_TYPE |
"info.bioinfweb.libralign.alignmentModelFactory.charStateSetType" |
public static final java.lang.String |
KEY_DEFINED_TOKENS |
"info.bioinfweb.libralign.alignmentModelFactory.tokens" |
public static final java.lang.String |
KEY_END_INDEX |
"info.bioinfweb.libralign.alignmentModelFactory.endIndex" |
public static final java.lang.String |
KEY_IS_PART_MODEL |
"info.bioinfweb.libralign.alignmentModelFactory.isPartModel" |
public static final java.lang.String |
KEY_PREFIX |
"info.bioinfweb.libralign.alignmentModelFactory." |
public static final java.lang.String |
KEY_START_INDEX |
"info.bioinfweb.libralign.alignmentModelFactory.startIndex" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_AMINO_ACID_CHARACTER_STATE_COUNT |
32 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_NUCLEOTIDE_CHARACTER_STATE_COUNT |
32 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_INITIAL_CAPACITY |
256 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
DEFAULT_ID_PREFIX |
"id" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
THYMINE |
"T" |
public static final java.lang.String |
URACILE |
"U" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
GAP |
-1 |
public static final int |
OUT_OF_RANGE |
-2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
NEEDED_BORDER_WIDTH |
1 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
NEEDED_BORDER_WIDTH |
3 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final float |
BASE_CALL_LINE_COLOR_FACTOR |
1.100000023841858f |
public static final float |
CUT_COLOR_FACTOR |
1.5f |
public static final double |
FONT_HEIGHT_FACTOR |
1.2 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
INDEX_LABEL_INTERVAL |
5 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
QUALITY_LABEL_PREFIX |
"quality-" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
LABEL_OVERCALL_PROBABILITY |
"overcall-probability" |
public static final java.lang.String |
LABEL_SUBSTITUTION_PROBABILITY |
"substitution-probability" |
public static final java.lang.String |
LABEL_UNDERCALL_PROBABILITY |
"undercall-probability" |