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LibrAlign
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Package Hierarchies:
info.bioinfweb.libralign.actions
,
info.bioinfweb.libralign.alignmentarea
,
info.bioinfweb.libralign.alignmentarea.content
,
info.bioinfweb.libralign.alignmentarea.label
,
info.bioinfweb.libralign.alignmentarea.order
,
info.bioinfweb.libralign.alignmentarea.paintsettings
,
info.bioinfweb.libralign.alignmentarea.rowsarea
,
info.bioinfweb.libralign.alignmentarea.selection
,
info.bioinfweb.libralign.alignmentarea.tokenpainter
,
info.bioinfweb.libralign.dataarea
,
info.bioinfweb.libralign.dataarea.implementations
,
info.bioinfweb.libralign.dataarea.implementations.charset
,
info.bioinfweb.libralign.dataarea.implementations.charset.events
,
info.bioinfweb.libralign.dataarea.implementations.pherogram
,
info.bioinfweb.libralign.dataarea.implementations.sequenceindex
,
info.bioinfweb.libralign.editsettings
,
info.bioinfweb.libralign.model
,
info.bioinfweb.libralign.model.adapters
,
info.bioinfweb.libralign.model.concatenated
,
info.bioinfweb.libralign.model.data
,
info.bioinfweb.libralign.model.events
,
info.bioinfweb.libralign.model.exception
,
info.bioinfweb.libralign.model.factory
,
info.bioinfweb.libralign.model.factory.biojava
,
info.bioinfweb.libralign.model.factory.continuous
,
info.bioinfweb.libralign.model.implementations
,
info.bioinfweb.libralign.model.implementations.decorate
,
info.bioinfweb.libralign.model.implementations.swingundo
,
info.bioinfweb.libralign.model.implementations.swingundo.edits
,
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence
,
info.bioinfweb.libralign.model.implementations.swingundo.edits.token
,
info.bioinfweb.libralign.model.io
,
info.bioinfweb.libralign.model.tokenset
,
info.bioinfweb.libralign.model.tokenset.continuous
,
info.bioinfweb.libralign.model.utils
,
info.bioinfweb.libralign.model.utils.indextranslation
,
info.bioinfweb.libralign.multiplealignments
,
info.bioinfweb.libralign.pherogram
,
info.bioinfweb.libralign.pherogram.distortion
,
info.bioinfweb.libralign.pherogram.model
,
info.bioinfweb.libralign.pherogram.provider
,
info.bioinfweb.libralign.pherogram.view
Class Hierarchy
java.lang.Object
info.bioinfweb.libralign.model.implementations.
AbstractAlignmentModel
<T> (implements info.bioinfweb.libralign.model.
AlignmentModel
<T>)
info.bioinfweb.libralign.model.implementations.decorate.
AbstractAlignmentModelDecorator
<T,U> (implements info.bioinfweb.libralign.model.
AlignmentModelView
<T,U>)
info.bioinfweb.libralign.model.implementations.decorate.
AbstractTokenReplacementAlignmentModelDecorator
<T,U>
info.bioinfweb.libralign.model.implementations.decorate.
DNAAlignmentModelDecorator
<T,U>
info.bioinfweb.libralign.model.implementations.decorate.
RNAAlignmentModelDecorator
<T,U>
info.bioinfweb.libralign.model.implementations.
AbstractUndecoratedAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
AbstractMapBasedAlignmentModel
<S,T>
info.bioinfweb.libralign.model.implementations.
AbstractListAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
ArrayListAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
PackedAlignmentModel
<T>
info.bioinfweb.libralign.model.implementations.
AbstractUnmodifyableAlignmentModel
<S,T> (implements info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T>)
info.bioinfweb.libralign.model.implementations.
BioJava3SequenceAlignmentModel
<S,C> (implements info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T>)
info.bioinfweb.libralign.model.implementations.
CharSequenceAlignmentModel
(implements info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T>)
info.bioinfweb.libralign.model.implementations.swingundo.
SwingUndoAlignmentModel
<T> (implements info.bioinfweb.libralign.model.
AlignmentModel
<T>, info.bioinfweb.libralign.model.
AlignmentModelView
<T,U>)
info.bioinfweb.libralign.model.factory.
AbstractAlignmentModelFactory
<T> (implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.model.factory.
BioPolymerCharAlignmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.model.factory.continuous.
DoubleAlignmentModelFactory
info.bioinfweb.libralign.model.factory.continuous.
FloatAlignmentModelFactory
info.bioinfweb.libralign.model.adapters.
AbstractBasicAlignmentModelView
<T> (implements info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>)
info.bioinfweb.libralign.model.adapters.
AbstractSingleSequenceDataAdapter
<T> (implements info.bioinfweb.libralign.model.adapters.
SingleSequenceDataAdapter
<T>)
info.bioinfweb.libralign.model.adapters.
SingleBioJava3SequenceAdapter
<T,C> (implements org.biojava3.core.sequence.template.Sequence<C>)
info.bioinfweb.libralign.model.adapters.
SingleCharSequenceAdapter
<T> (implements java.lang.CharSequence, info.bioinfweb.libralign.model.adapters.
SingleSequenceDataAdapter
<T>)
info.bioinfweb.libralign.model.adapters.
BioJava3SequenceAdapter
<T,C> (implements info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T>)
info.bioinfweb.libralign.model.adapters.
CharSequenceAdapter
<T> (implements info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T>)
info.bioinfweb.libralign.model.adapters.
StringAdapter
<T>
info.bioinfweb.libralign.model.implementations.decorate.
DelegatedAlignmentModelView
<T> (implements info.bioinfweb.libralign.model.
AlignmentModelView
<T,U>)
java.util.AbstractCollection<E> (implements java.util.Collection<E>)
java.util.AbstractSet<E> (implements java.util.Set<E>)
info.bioinfweb.libralign.model.tokenset.
BioJava3TokenSet
<C> (implements info.bioinfweb.libralign.model.tokenset.
TokenSet
<T>)
java.util.HashSet<E> (implements java.lang.Cloneable, java.io.Serializable, java.util.Set<E>)
info.bioinfweb.libralign.model.tokenset.
AbstractTokenSet
<T> (implements info.bioinfweb.libralign.model.tokenset.
TokenSet
<T>)
info.bioinfweb.libralign.model.tokenset.
CharacterTokenSet
info.bioinfweb.libralign.model.tokenset.
DefaultTokenSet
<T>
java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
info.bioinfweb.commons.collections.
NonOverlappingIntervalList
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSet
info.bioinfweb.libralign.model.tokenset.continuous.
AbstractContinuousSet
<T> (implements info.bioinfweb.libralign.model.tokenset.
TokenSet
<T>)
info.bioinfweb.libralign.model.tokenset.continuous.
DoubleTokenSet
info.bioinfweb.libralign.model.tokenset.continuous.
FloatTokenSet
info.bioinfweb.libralign.model.io.
AbstractDataModelEventReader
<M> (implements info.bioinfweb.libralign.model.io.
DataModelEventReader
<M>)
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetEventReader
info.bioinfweb.commons.swing.
AbstractDocumentEdit
(implements javax.swing.undo.UndoableEdit)
info.bioinfweb.libralign.model.implementations.swingundo.edits.
LibrAlignSwingAlignmentEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingSequenceEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingConcreteAddSequenceEdit
<T> (implements info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingAddSequenceEdit
)
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingRemoveSequenceEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingRenameSequenceEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingTokenEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingInsertRemoveTokensEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingInsertTokensEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingRemoveTokensEdit
<T>
info.bioinfweb.libralign.model.implementations.swingundo.edits.token.
SwingSetTokensEdit
<T>
info.bioinfweb.libralign.model.utils.indextranslation.
AbstractIndexTranslator
<T,D> (implements info.bioinfweb.libralign.model.utils.indextranslation.
IndexTranslator
<T>)
info.bioinfweb.libralign.model.utils.indextranslation.
RandomAccessIndexTranslator
<T>
org.apache.commons.collections4.map.
AbstractIterableMap
<K,V> (implements org.apache.commons.collections4.
IterableMap
<K,V>)
org.apache.commons.collections4.map.
AbstractMapDecorator
<K,V>
org.apache.commons.collections4.map.
ListOrderedMap
<K,V> (implements org.apache.commons.collections4.
OrderedMap
<K,V>, java.io.Serializable)
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetDataModel
(implements info.bioinfweb.libralign.model.data.
DataModel
)
java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
info.bioinfweb.commons.collections.
ParameterMap
info.bioinfweb.libralign.model.factory.
NewAlignmentModelParameterMap
info.bioinfweb.libralign.alignmentarea.content.
SequenceAreaMap
(implements info.bioinfweb.libralign.alignmentarea.selection.
SelectionListener
<E>)
info.bioinfweb.libralign.model.implementations.
AbstractSequenceIDIterator
<P> (implements java.util.Iterator<E>)
info.bioinfweb.libralign.alignmentarea.tokenpainter.
AbstractTokenPainter
(implements info.bioinfweb.libralign.alignmentarea.tokenpainter.
TokenPainter
)
info.bioinfweb.libralign.alignmentarea.tokenpainter.
SingleColorTokenPainter
(implements info.bioinfweb.libralign.alignmentarea.tokenpainter.
TokenPainter
)
info.bioinfweb.libralign.alignmentarea.tokenpainter.
AbstractBioPolymerTokenPainter
info.bioinfweb.libralign.alignmentarea.tokenpainter.
AminoAcidTokenPainter
info.bioinfweb.libralign.alignmentarea.tokenpainter.
NucleotideTokenPainter
info.bioinfweb.libralign.actions.
AlignmentActionProvider
<T>
info.bioinfweb.libralign.alignmentarea.selection.
AlignmentCursor
info.bioinfweb.libralign.model.io.
AlignmentDataReader
info.bioinfweb.libralign.alignmentarea.label.
AlignmentLabelSubAreaIterator
(implements java.util.Iterator<E>)
info.bioinfweb.libralign.model.
AlignmentModelChangeAdapter
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
)
info.bioinfweb.libralign.model.io.
AlignmentModelEventReader
(implements info.bioinfweb.jphyloio.push.JPhyloIOEventListener)
info.bioinfweb.libralign.model.utils.
AlignmentModelUtils
info.bioinfweb.libralign.alignmentarea.content.
AlignmentSubAreaInfo
info.bioinfweb.libralign.alignmentarea.content.
AlignmentSubAreaIterator
(implements java.util.Iterator<E>)
info.bioinfweb.libralign.model.factory.biojava.
BioJava3AminoAcidAligmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.model.factory.biojava.
BioJava3NucleotideAlignmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.pherogram.provider.
BioJavaPherogramProvider
(implements info.bioinfweb.libralign.pherogram.provider.
PherogramProvider
)
info.bioinfweb.libralign.model.utils.
CharSequenceTokenScanner
<T>
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetDataAdapter
(implements info.bioinfweb.jphyloio.dataadapters.ObjectListDataAdapter<E>)
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JPanel (implements javax.accessibility.Accessible)
info.bioinfweb.tic.toolkit.
AbstractSwingComponent
(implements info.bioinfweb.tic.toolkit.
SwingToolkitComponent
)
info.bioinfweb.libralign.alignmentarea.rowsarea.
SwingAlignmentRowsArea
<C> (implements javax.swing.Scrollable, info.bioinfweb.libralign.alignmentarea.rowsarea.
ToolkitSpecificAlignmentRowsArea
<C>)
info.bioinfweb.libralign.alignmentarea.content.
ScrollContainerSwingAlignmentContentArea
(implements javax.swing.Scrollable, info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
)
info.bioinfweb.libralign.alignmentarea.label.
ScrollContainerSwingAlignmentLabelArea
(implements info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
)
info.bioinfweb.libralign.multiplealignments.
SwingMultipleAlignmentsContainer
(implements info.bioinfweb.libralign.multiplealignments.
ToolkitSpecificMultipleAlignmentsContainer
)
javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
info.bioinfweb.libralign.alignmentarea.
ScrollContainerSwingAlignmentArea
(implements info.bioinfweb.tic.toolkit.
JScrollPaneToolkitComponent
, info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
)
info.bioinfweb.libralign.pherogram.view.
SwingPhergramView
(implements info.bioinfweb.libralign.pherogram.view.
ToolkitIndependentPhergramView
)
info.bioinfweb.libralign.model.tokenset.continuous.
ContinuousToken
<V> (implements java.lang.Comparable<T>)
info.bioinfweb.libralign.dataarea.
DataAreaChangeEventList
(implements java.util.List<E>)
info.bioinfweb.libralign.dataarea.
DataAreaList
info.bioinfweb.libralign.dataarea.
DataAreaLocation
info.bioinfweb.libralign.dataarea.
DataAreaSequenceChangeListener
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
)
info.bioinfweb.libralign.dataarea.
DataAreasModel
info.bioinfweb.libralign.dataarea.
DataAreaVisibleIterator
(implements java.util.Iterator<E>)
info.bioinfweb.libralign.model.io.
DataModelKey
info.bioinfweb.libralign.editsettings.
EditSettings
info.bioinfweb.jphyloio.dataadapters.implementations.EmptyAnnotatedDataAdapter<E> (implements info.bioinfweb.jphyloio.dataadapters.AnnotatedDataAdapter)
info.bioinfweb.jphyloio.dataadapters.implementations.NoCharDefsNoSetsMatrixDataAdapter (implements info.bioinfweb.jphyloio.dataadapters.MatrixDataAdapter)
info.bioinfweb.libralign.model.io.
AlignmentModelDataAdapter
<T> (implements info.bioinfweb.jphyloio.dataadapters.MatrixDataAdapter)
java.util.EventObject (implements java.io.Serializable)
javax.swing.event.ChangeEvent
info.bioinfweb.libralign.model.events.
AlignmentModelChangeEvent
<T> (implements java.lang.Cloneable)
info.bioinfweb.libralign.model.events.
SequenceChangeEvent
<T>
info.bioinfweb.libralign.model.events.
TokenChangeEvent
<T>
info.bioinfweb.libralign.model.events.
SequenceRenamedEvent
<T>
info.bioinfweb.libralign.dataarea.implementations.charset.events.
CharSetDataModelChangeEvent
info.bioinfweb.libralign.dataarea.implementations.charset.events.
CharSetChangeEvent
info.bioinfweb.libralign.dataarea.implementations.charset.events.
CharSetColorChangeEvent
info.bioinfweb.libralign.dataarea.implementations.charset.events.
CharSetColumnChangeEvent
info.bioinfweb.libralign.dataarea.implementations.charset.events.
CharSetRenamedEvent
info.bioinfweb.libralign.pherogram.model.
PherogramModelChangeEvent
info.bioinfweb.libralign.pherogram.model.
PherogramCutPositionChangeEvent
info.bioinfweb.libralign.pherogram.model.
PherogramFirstSeqPosChangeEvent
info.bioinfweb.libralign.pherogram.model.
PherogramProviderChangeEvent
info.bioinfweb.libralign.dataarea.
DataAreaChangeEvent
info.bioinfweb.libralign.editsettings.
EditSettingsChangeEvent
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettingsEvent
info.bioinfweb.libralign.alignmentarea.paintsettings.
TokenPainterReplacedEvent
info.bioinfweb.libralign.alignmentarea.paintsettings.
ZoomChangeEvent
info.bioinfweb.tic.
TICPaintEvent
info.bioinfweb.libralign.alignmentarea.content.
AlignmentPaintEvent
info.bioinfweb.libralign.pherogram.distortion.
GapPattern
info.bioinfweb.libralign.alignmentarea.
GUITools
info.bioinfweb.libralign.multiplealignments.
HorizontalScrollingSynchronizer
(implements info.bioinfweb.tic.scrolling.
TICScrollListener
)
info.bioinfweb.libralign.model.utils.indextranslation.
IndexRelation
info.bioinfweb.libralign.pherogram.model.
PherogramAlignmentRelation
info.bioinfweb.libralign.alignmentarea.content.
InputEventForwarder
(implements info.bioinfweb.tic.input.
TICKeyListener
, info.bioinfweb.tic.input.
TICMouseListener
, info.bioinfweb.tic.input.
TICMouseWheelListener
)
info.bioinfweb.libralign.model.io.
IOTools
info.bioinfweb.commons.collections.
ListDecorator
<E> (implements java.util.List<E>)
info.bioinfweb.commons.collections.observable.
ObservableList
<E>
info.bioinfweb.libralign.multiplealignments.
AlignmentAreaList
info.bioinfweb.libralign.multiplealignments.
MultipleAlignmentsModelEventForwarder
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
, info.bioinfweb.libralign.dataarea.
DataAreasModelListener
)
info.bioinfweb.libralign.model.data.
NoArgDataModelFactory
<M> (implements info.bioinfweb.libralign.model.data.
DataModelFactory
<M>)
info.bioinfweb.libralign.alignmentarea.selection.
OneDimensionalSelection
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettings
info.bioinfweb.libralign.pherogram.model.
PherogramComponentModel
info.bioinfweb.libralign.pherogram.model.
PherogramAreaModel
(implements info.bioinfweb.libralign.model.data.
DataModel
)
info.bioinfweb.libralign.pherogram.
PherogramFormats
info.bioinfweb.libralign.pherogram.
PherogramPainter
info.bioinfweb.libralign.pherogram.
PherogramUtils
info.bioinfweb.libralign.model.utils.indextranslation.
RandomAccessIndexTranslator.IndexTranslations
info.bioinfweb.libralign.pherogram.provider.
ReverseComplementPherogramProvider
(implements info.bioinfweb.libralign.pherogram.provider.
PherogramProvider
)
info.bioinfweb.libralign.pherogram.distortion.
ScaledPherogramDistortion
(implements info.bioinfweb.libralign.pherogram.distortion.
PherogramDistortion
)
info.bioinfweb.libralign.alignmentarea.selection.
SelectionModel
info.bioinfweb.libralign.alignmentarea.selection.
SelectionSynchronizer
info.bioinfweb.libralign.model.implementations.
SequenceIDManager
info.bioinfweb.libralign.alignmentarea.order.
SequenceOrder
info.bioinfweb.libralign.pherogram.model.
ShiftChange
info.bioinfweb.libralign.model.factory.
StringAlignmentModelFactory
(implements info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>)
info.bioinfweb.libralign.alignmentarea.
SWTScrollableResizeListener
(implements org.eclipse.swt.events.ControlListener)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
java.lang.RuntimeException
info.bioinfweb.libralign.model.exception.
AlignmentModelException
info.bioinfweb.libralign.model.exception.
AlignmentSourceNotWritableException
info.bioinfweb.libralign.model.exception.
InvalidTokenException
info.bioinfweb.libralign.model.exception.
SequenceNotFoundException
info.bioinfweb.libralign.model.exception.
InvalidTokenRepresentationException
info.bioinfweb.libralign.model.adapters.
InvalidUnderlyingTokenException
info.bioinfweb.tic.
TICComponent
info.bioinfweb.libralign.alignmentarea.content.
AbstractAlignmentSubAreaComponent
info.bioinfweb.libralign.alignmentarea.content.
AlignmentContentArea
info.bioinfweb.libralign.alignmentarea.label.
AlignmentLabelArea
info.bioinfweb.libralign.alignmentarea.label.
AlignmentLabelSubArea
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetNameArea
info.bioinfweb.libralign.alignmentarea.label.
DefaultLabelSubArea
info.bioinfweb.libralign.alignmentarea.label.
TextLabelArea
info.bioinfweb.libralign.alignmentarea.label.
SequenceLabelArea
info.bioinfweb.libralign.alignmentarea.content.
AlignmentSubArea
info.bioinfweb.libralign.dataarea.
DataArea
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
)
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetArea
info.bioinfweb.libralign.dataarea.implementations.
ConsensusSequenceArea
info.bioinfweb.libralign.dataarea.implementations.
LabelDataArea
info.bioinfweb.libralign.dataarea.implementations.pherogram.
PherogramArea
(implements info.bioinfweb.libralign.pherogram.
PherogramComponent
)
info.bioinfweb.libralign.dataarea.implementations.sequenceindex.
SequenceIndexArea
info.bioinfweb.libralign.alignmentarea.content.
SequenceArea
info.bioinfweb.libralign.multiplealignments.
MultipleAlignmentsContainer
info.bioinfweb.libralign.pherogram.view.
PherogramHeadingView
info.bioinfweb.libralign.pherogram.view.
PherogramTraceCurveView
(implements info.bioinfweb.libralign.pherogram.
PherogramComponent
)
info.bioinfweb.libralign.pherogram.view.
PherogramView
info.bioinfweb.tic.scrolling.
ScrollingTICComponent
info.bioinfweb.libralign.alignmentarea.
AlignmentArea
(implements info.bioinfweb.libralign.model.
AlignmentModelChangeListener
, info.bioinfweb.libralign.dataarea.
DataAreasModelListener
)
info.bioinfweb.tic.input.
TICMouseAdapter
(implements info.bioinfweb.tic.input.
TICMouseListener
)
info.bioinfweb.libralign.alignmentarea.content.
CursorSelectionInputListener
(implements info.bioinfweb.tic.input.
TICKeyListener
, info.bioinfweb.tic.input.
TICMouseListener
)
info.bioinfweb.libralign.model.factory.
TokenDefinition
info.bioinfweb.libralign.alignmentarea.paintsettings.
TokenPainterList
(implements java.lang.Iterable<T>)
info.bioinfweb.libralign.alignmentarea.paintsettings.
TokenPainterMap
info.bioinfweb.libralign.model.io.
TokenSetAdapter
<T> (implements info.bioinfweb.jphyloio.dataadapters.ObjectListDataAdapter<E>)
info.bioinfweb.libralign.model.tokenset.
TokenSetTools
info.bioinfweb.libralign.pherogram.distortion.
UnscaledPherogramDistortion
(implements info.bioinfweb.libralign.pherogram.distortion.
PherogramDistortion
)
org.eclipse.swt.widgets.Widget
org.eclipse.swt.widgets.Control (implements org.eclipse.swt.graphics.Drawable)
org.eclipse.swt.widgets.Scrollable
org.eclipse.swt.widgets.Composite
info.bioinfweb.tic.toolkit.
AbstractSWTComposite
(implements info.bioinfweb.tic.toolkit.
SWTToolkitComponent
)
info.bioinfweb.libralign.alignmentarea.
AbstractSWTAlignmentArea
(implements info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
)
info.bioinfweb.libralign.alignmentarea.
DirectPaintingSWTAlignmentArea
(implements info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
)
info.bioinfweb.libralign.alignmentarea.
ScrollContainerSWTAlignmentArea
(implements info.bioinfweb.tic.toolkit.
ScrolledCompositeToolkitComponent
, info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
)
info.bioinfweb.libralign.alignmentarea.rowsarea.
SWTAlignmentRowsArea
<C> (implements info.bioinfweb.libralign.alignmentarea.rowsarea.
ToolkitSpecificAlignmentRowsArea
<C>)
info.bioinfweb.libralign.alignmentarea.content.
ScrollContainerSWTAlignmentContentArea
(implements info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
)
info.bioinfweb.libralign.alignmentarea.label.
SWTAlignmentLabelArea
(implements info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
)
info.bioinfweb.libralign.multiplealignments.
SWTMultipleAlignmentsContainer
(implements info.bioinfweb.libralign.multiplealignments.
ToolkitSpecificMultipleAlignmentsContainer
)
info.bioinfweb.libralign.pherogram.view.
SWTPhergramView
(implements info.bioinfweb.libralign.pherogram.view.
ToolkitIndependentPhergramView
)
org.eclipse.swt.widgets.Canvas
info.bioinfweb.tic.toolkit.
AbstractSWTWidget
(implements org.eclipse.swt.events.PaintListener, info.bioinfweb.tic.toolkit.
SWTToolkitComponent
)
info.bioinfweb.tic.toolkit.
DefaultSWTComposite
info.bioinfweb.tic.toolkit.
DirectPaintingSWTScrollContainer
(implements info.bioinfweb.tic.toolkit.
ScrollingToolkitComponent
)
info.bioinfweb.libralign.alignmentarea.
DirectPaintingSWTAlignmentContentScroller
(implements info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
)
Interface Hierarchy
info.bioinfweb.libralign.model.
AlignmentModel
<T>
info.bioinfweb.libralign.model.
AlignmentModelView
<T,U> (also extends info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>)
info.bioinfweb.libralign.model.concatenated.
ConcatenatedAlignmentModel
info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T> (also extends info.bioinfweb.libralign.model.
SequenceAccess
<S>)
info.bioinfweb.libralign.model.
AlignmentModelChangeListener
info.bioinfweb.libralign.model.factory.
AlignmentModelFactory
<T>
info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>
info.bioinfweb.libralign.model.
AlignmentModelView
<T,U> (also extends info.bioinfweb.libralign.model.
AlignmentModel
<T>)
info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T> (also extends info.bioinfweb.libralign.model.
SequenceAccess
<S>)
info.bioinfweb.libralign.model.adapters.
SingleSequenceDataAdapter
<T>
info.bioinfweb.libralign.dataarea.implementations.charset.
CharSetDataModelListener
java.lang.Cloneable
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.util.Set<E>)
info.bioinfweb.libralign.alignmentarea.tokenpainter.
ColorOverlay
info.bioinfweb.libralign.model.data.
DataModel
info.bioinfweb.libralign.pherogram.provider.
PherogramProvider
info.bioinfweb.libralign.model.data.
DataModelFactory
<M>
java.util.EventListener
info.bioinfweb.libralign.dataarea.
DataAreasModelListener
info.bioinfweb.libralign.editsettings.
EditSettingsListener
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettingsListener
java.beans.PropertyChangeListener
info.bioinfweb.libralign.alignmentarea.paintsettings.
PaintSettingsListener
info.bioinfweb.libralign.alignmentarea.selection.
SelectionListener
<E>
info.bioinfweb.libralign.model.utils.indextranslation.
IndexTranslator
<T>
java.lang.Iterable<T>
java.util.Collection<E>
java.util.Set<E>
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.Cloneable)
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.Cloneable, java.util.Set<E>)
java.util.Set<E>
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.Cloneable)
info.bioinfweb.libralign.model.tokenset.
TokenSet
<T> (also extends java.lang.Cloneable, java.util.Set<E>)
info.bioinfweb.jphyloio.push.JPhyloIOEventListener
info.bioinfweb.libralign.model.io.
DataModelEventReader
<M>
info.bioinfweb.libralign.pherogram.
PherogramComponent
info.bioinfweb.libralign.pherogram.model.
PherogramComponentModelListener
info.bioinfweb.libralign.pherogram.distortion.
PherogramDistortion
info.bioinfweb.libralign.model.
SequenceAccess
<S>
info.bioinfweb.libralign.model.
SequenceAccessAlignmentModel
<S,T> (also extends info.bioinfweb.libralign.model.
AlignmentModel
<T>)
info.bioinfweb.libralign.model.adapters.
SequenceDataAdapter
<S,T> (also extends info.bioinfweb.libralign.model.
BasicAlignmentModelView
<T>)
info.bioinfweb.libralign.model.implementations.swingundo.
SwingEditFactory
<T>
info.bioinfweb.libralign.alignmentarea.tokenpainter.
TokenPainter
info.bioinfweb.tic.toolkit.
ToolkitComponent
info.bioinfweb.tic.toolkit.
ScrollingToolkitComponent
info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
info.bioinfweb.libralign.pherogram.view.
ToolkitIndependentPhergramView
info.bioinfweb.libralign.alignmentarea.
ToolkitSpecificAlignmentArea
info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
info.bioinfweb.libralign.alignmentarea.rowsarea.
ToolkitSpecificAlignmentRowsArea
<C>
info.bioinfweb.libralign.alignmentarea.content.
ToolkitSpecificAlignmentContentArea
info.bioinfweb.libralign.alignmentarea.label.
ToolkitSpecificAlignmentLabelArea
info.bioinfweb.libralign.multiplealignments.
ToolkitSpecificMultipleAlignmentsContainer
javax.swing.undo.UndoableEdit
info.bioinfweb.libralign.model.implementations.swingundo.edits.sequence.
SwingAddSequenceEdit
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
info.bioinfweb.libralign.alignmentarea.order.
SequenceOrderType
info.bioinfweb.libralign.alignmentarea.selection.
SelectionDimension
info.bioinfweb.libralign.alignmentarea.selection.
SelectionType
info.bioinfweb.libralign.dataarea.
DataAreaListType
info.bioinfweb.libralign.editsettings.
WorkingMode
info.bioinfweb.libralign.model.
AlignmentModelWriteType
info.bioinfweb.libralign.pherogram.
PherogramFormats.QualityOutputType
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