Uses of Class
info.bioinfweb.libralign.alignmentarea.content.AlignmentSubArea

Packages that use AlignmentSubArea

Package	Description
info.bioinfweb.libralign.alignmentarea.content	Contains classes related to AlignmentContentArea which display the contents of an alignment.
info.bioinfweb.libralign.alignmentarea.label	Contains general classes implementing the labeling of sequences and data areas.
info.bioinfweb.libralign.dataarea	Contains DataArea from which all data areas used in LibrAlign must be inherited as well as related classes and a set of general data area implementations provided with LibrAlign which are located in the subpackage implementations.
info.bioinfweb.libralign.dataarea.implementations	Contains classes that implement a concrete data area.
info.bioinfweb.libralign.dataarea.implementations.charset	Contains data area related classes to display character sets of an alignment.
info.bioinfweb.libralign.dataarea.implementations.pherogram	Contains PherogramArea and other classes used in its implementation.
info.bioinfweb.libralign.dataarea.implementations.sequenceindex

Uses of AlignmentSubArea in info.bioinfweb.libralign.alignmentarea.content

Subclasses of AlignmentSubArea in info.bioinfweb.libralign.alignmentarea.content

Modifier and Type	Class and Description
class	SequenceArea The area inside an AlignmentArea that displays one sequence of the alignment.

Methods in info.bioinfweb.libralign.alignmentarea.content that return AlignmentSubArea

Modifier and Type	Method and Description
AlignmentSubArea	AlignmentSubAreaInfo.getArea()
AlignmentSubArea	AlignmentContentArea.getAreaByPaintY(double y) Returns the child component containing the specified y-coordinate.
AlignmentSubArea	AbstractAlignmentSubAreaComponent.getOwner() Returns the alignment subarea that is displayed using this component.
AlignmentSubArea	AlignmentSubAreaIterator.next()

Constructors in info.bioinfweb.libralign.alignmentarea.content with parameters of type AlignmentSubArea

Constructor and Description
AbstractAlignmentSubAreaComponent(AlignmentSubArea owner) Creates a new instance of this class.
AlignmentSubAreaInfo(AlignmentSubArea area, double y)

Uses of AlignmentSubArea in info.bioinfweb.libralign.alignmentarea.label

Methods in info.bioinfweb.libralign.alignmentarea.label that return AlignmentSubArea

Modifier and Type	Method and Description
AlignmentSubArea	AlignmentLabelSubArea.getLabeledArea() Returns the alignment sub area that is labeled by this instance.

Constructors in info.bioinfweb.libralign.alignmentarea.label with parameters of type AlignmentSubArea

Constructor and Description
AlignmentLabelSubArea(AlignmentLabelArea owner, AlignmentSubArea labeledSubArea) Creates a new instance of this class.
DefaultLabelSubArea(AlignmentLabelArea owner, AlignmentSubArea labeledSubArea)
TextLabelArea(AlignmentLabelArea owner, AlignmentSubArea labeledSubArea)

Uses of AlignmentSubArea in info.bioinfweb.libralign.dataarea

Subclasses of AlignmentSubArea in info.bioinfweb.libralign.dataarea

Modifier and Type	Class and Description
class	DataArea All classes representing a data area in an AlignmentArea must be inherited from this class.

Uses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations

Subclasses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations

Modifier and Type	Class and Description
class	ConsensusSequenceArea A data area that displays the consensus sequence of an alignment.
class	LabelDataArea A simple data area implementation that displays one line of text.

Uses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations.charset

Subclasses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations.charset

Modifier and Type	Class and Description
class	CharSetArea A data area displaying different character sets associated with the current alignment, as they are e.g.

Uses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations.pherogram

Subclasses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations.pherogram

Modifier and Type	Class and Description
class	PherogramArea A data area displaying a trace file resulting from Sanger sequencing.

Uses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations.sequenceindex

Subclasses of AlignmentSubArea in info.bioinfweb.libralign.dataarea.implementations.sequenceindex

Modifier and Type	Class and Description
class	SequenceIndexArea A data area displaying the indices of aligned sequences.