Uses of Interface
info.bioinfweb.libralign.alignmentarea.tokenpainter.TokenPainter

Packages that use TokenPainter

Package	Description
info.bioinfweb.libralign.alignmentarea.paintsettings	Contains classes managing the painting of the contents of AlignmentAreas.
info.bioinfweb.libralign.alignmentarea.tokenpainter	Contains implementations of TokenPainter
info.bioinfweb.libralign.dataarea.implementations.pherogram	Contains PherogramArea and other classes used in its implementation.

Uses of TokenPainter in info.bioinfweb.libralign.alignmentarea.paintsettings

Methods in info.bioinfweb.libralign.alignmentarea.paintsettings that return TokenPainter

Modifier and Type	Method and Description
TokenPainter	TokenPainterList.get(int index) Returns the painter at the specified index.
TokenPainter	TokenPainterReplacedEvent.getNewPainter() Returns the painter that replaced the previous one
TokenPainter	TokenPainterMap.getPainter(CharacterStateSetType type) Returns the best matching painter to specified token type.
TokenPainter	TokenPainterReplacedEvent.getPreviousPainter() Returns the painter that has been replaced.
TokenPainter	TokenPainterList.painterByColumn(int columnIndex) Returns the according painter to the specified column index.
TokenPainter	TokenPainterMap.putTokenPainter(CharacterStateSetType type, TokenPainter painter) Specifies a new painter for a certain token type.
TokenPainter	TokenPainterMap.removeTokenPainter(CharacterStateSetType type) Removes the painter mapping for the specified token type.
TokenPainter	TokenPainterList.set(int index, TokenPainter painter) Replaces the painter at the specified position in this list with the specified new painter.

Methods in info.bioinfweb.libralign.alignmentarea.paintsettings that return types with arguments of type TokenPainter

Modifier and Type	Method and Description
java.util.Iterator<TokenPainter>	TokenPainterList.iterator() Returns an unmodifiable iterator over all painter of this list.

Methods in info.bioinfweb.libralign.alignmentarea.paintsettings with parameters of type TokenPainter

Modifier and Type	Method and Description
protected void	PaintSettings.fireTokenPainterReplaced(TokenPainter previousPainter, TokenPainter newPainter, int index)
int	TokenPainterList.indexOf(TokenPainter painter) Returns the first index of the specified token painter in this list.
TokenPainter	TokenPainterMap.putTokenPainter(CharacterStateSetType type, TokenPainter painter) Specifies a new painter for a certain token type.
TokenPainter	TokenPainterList.set(int index, TokenPainter painter) Replaces the painter at the specified position in this list with the specified new painter.

Constructors in info.bioinfweb.libralign.alignmentarea.paintsettings with parameters of type TokenPainter

Constructor and Description
TokenPainterReplacedEvent(PaintSettings source, TokenPainter previousPainter, TokenPainter newPainter, int index) Creates a new instance of this class.

Uses of TokenPainter in info.bioinfweb.libralign.alignmentarea.tokenpainter

Classes in info.bioinfweb.libralign.alignmentarea.tokenpainter that implement TokenPainter

Modifier and Type	Class and Description
class	AbstractBioPolymerTokenPainter Implements shared functionality for painting nucleotide and amino acid tokens including their ambiguity codes.
class	AbstractTokenPainter Implements shared functionality between implementations of TokenPainter.
class	AminoAcidTokenPainter Token painter that paints amino acids.
class	NucleotideTokenPainter Token painter that paints nucleotides.
class	SingleColorTokenPainter Token painter that paints the string representation of a token centered into a rectangle filled with a specified background color.

Uses of TokenPainter in info.bioinfweb.libralign.dataarea.implementations.pherogram

Methods in info.bioinfweb.libralign.dataarea.implementations.pherogram that return TokenPainter

Modifier and Type	Method and Description
TokenPainter	PherogramArea.getRelatedTokenPainter()