| Package | Description |
|---|---|
| info.bioinfweb.libralign.alignmentarea |
Contains basic implementations for displaying an alignment area.
|
| info.bioinfweb.libralign.alignmentarea.paintsettings |
Contains classes managing the painting of the contents of
AlignmentAreas. |
| info.bioinfweb.libralign.alignmentarea.tokenpainter |
Contains implementations of
TokenPainter |
| info.bioinfweb.libralign.dataarea.implementations.pherogram |
Contains
PherogramArea and other classes used in its
implementation. |
| Class and Description |
|---|
| ColorOverlay
Classes implementing this interface define areas in the alignment that should be overlain with a certain color.
|
| Class and Description |
|---|
| TokenPainter
Interface to be implemented by all classes responsible for painting tokens from an
AlignmentModel
in an AlignmentArea. |
| Class and Description |
|---|
| AbstractBioPolymerTokenPainter
Implements shared functionality for painting nucleotide and amino acid tokens including
their ambiguity codes.
|
| AbstractTokenPainter
Implements shared functionality between implementations of
TokenPainter. |
| SingleColorTokenPainter
Token painter that paints the string representation of a token centered into a rectangle filled with a
specified background color.
|
| TokenPainter
Interface to be implemented by all classes responsible for painting tokens from an
AlignmentModel
in an AlignmentArea. |
| Class and Description |
|---|
| TokenPainter
Interface to be implemented by all classes responsible for painting tokens from an
AlignmentModel
in an AlignmentArea. |