Uses of Class
info.bioinfweb.libralign.dataarea.DataArea

Packages that use DataArea

Package	Description
info.bioinfweb.libralign.dataarea	Contains DataArea from which all data areas used in LibrAlign must be inherited as well as related classes and a set of general data area implementations provided with LibrAlign which are located in the subpackage implementations.
info.bioinfweb.libralign.dataarea.implementations	Contains classes that implement a concrete data area.
info.bioinfweb.libralign.dataarea.implementations.charset	Contains data area related classes to display character sets of an alignment.
info.bioinfweb.libralign.dataarea.implementations.pherogram	Contains PherogramArea and other classes used in its implementation.
info.bioinfweb.libralign.dataarea.implementations.sequenceindex

Uses of DataArea in info.bioinfweb.libralign.dataarea

Methods in info.bioinfweb.libralign.dataarea that return DataArea

Modifier and Type	Method and Description
DataArea	DataAreaChangeEventList.get(int index)
DataArea	DataAreaChangeEvent.getAffectedElement() Returns the first affected element.
DataArea	DataAreaVisibleIterator.next()
DataArea	DataAreaChangeEventList.remove(int index)
DataArea	DataAreaChangeEventList.set(int index, DataArea element)

Methods in info.bioinfweb.libralign.dataarea that return types with arguments of type DataArea

Modifier and Type	Method and Description
java.util.Collection<? extends DataArea>	DataAreaChangeEvent.getAffectedElements()
protected java.util.List<DataArea>	DataAreaChangeEventList.getUnderlyingList()
java.util.Iterator<DataArea>	DataAreaChangeEventList.iterator()
java.util.ListIterator<DataArea>	DataAreaChangeEventList.listIterator()
java.util.ListIterator<DataArea>	DataAreaChangeEventList.listIterator(int index)
java.util.Collection<DataArea>	DataAreaList.setAllVisible(boolean visible) Fades all elements in this list in or out.
java.util.List<DataArea>	DataAreaChangeEventList.subList(int fromIndex, int toIndex)
java.util.Iterator<DataArea>	DataAreaList.visibleIterator() Returns an iterator that only iterates over the visible data areas.

Methods in info.bioinfweb.libralign.dataarea with parameters of type DataArea

Modifier and Type	Method and Description
boolean	DataAreaChangeEventList.add(DataArea element) Appends the specified data area to the end of this list.
void	DataAreaChangeEventList.add(int index, DataArea element)
protected void	DataAreasModel.fireInsertedRemoved(ListChangeType type, DataArea affectedElements) Informs all listeners that a data area has been added or removed.
protected void	DataAreasModel.fireVisibilityChanged(boolean eventsFromSingleList, DataArea affectedElement) Informs all listeners that the visibility of a data area has changed.
DataArea	DataAreaChangeEventList.set(int index, DataArea element)

Method parameters in info.bioinfweb.libralign.dataarea with type arguments of type DataArea

Modifier and Type	Method and Description
boolean	DataAreaChangeEventList.addAll(java.util.Collection<? extends DataArea> c)
boolean	DataAreaChangeEventList.addAll(int index, java.util.Collection<? extends DataArea> c)
protected void	DataAreasModel.finishVisibilityUpdate(boolean eventsFromSingleList, java.util.Collection<? extends DataArea> affectedElements) Enables #fireVisibilityChanged(DataAreaList, Collection) again and makes a call of this method to inform the listeners about previous changes.
protected void	DataAreasModel.fireInsertedRemoved(ListChangeType type, java.util.Collection<? extends DataArea> affectedElement) Informs all listeners that a data area has been added or removed.
protected void	DataAreasModel.fireVisibilityChanged(boolean eventsFromSingleList, java.util.Collection<? extends DataArea> affectedElements) Informs all listeners that the visibility of a set of data areas has changed.

Constructors in info.bioinfweb.libralign.dataarea with parameters of type DataArea

Constructor and Description
DataAreaChangeEvent(java.lang.Object source, boolean eventsFromSingleList, ListChangeType type, DataArea affectedElement) Creates a new event object.

Constructor parameters in info.bioinfweb.libralign.dataarea with type arguments of type DataArea

Constructor and Description
DataAreaChangeEvent(java.lang.Object source, boolean eventsFromSingleList, ListChangeType type, java.util.Collection<? extends DataArea> affectedElements) Creates a new event object.
DataAreaChangeEventList(DataAreaList dataAreaList, java.util.List<DataArea> underlyingList) Creates a new instance of this class.
DataAreaChangeEventList(java.util.List<DataArea> underlyingList) This constructor is only meant to be used in DataAreaList.
DataAreaVisibleIterator(java.util.Iterator<DataArea> completeIterator) Creates a new instance of this class.

Uses of DataArea in info.bioinfweb.libralign.dataarea.implementations

Subclasses of DataArea in info.bioinfweb.libralign.dataarea.implementations

Modifier and Type	Class and Description
class	ConsensusSequenceArea A data area that displays the consensus sequence of an alignment.
class	LabelDataArea A simple data area implementation that displays one line of text.

Uses of DataArea in info.bioinfweb.libralign.dataarea.implementations.charset

Subclasses of DataArea in info.bioinfweb.libralign.dataarea.implementations.charset

Modifier and Type	Class and Description
class	CharSetArea A data area displaying different character sets associated with the current alignment, as they are e.g.

Uses of DataArea in info.bioinfweb.libralign.dataarea.implementations.pherogram

Subclasses of DataArea in info.bioinfweb.libralign.dataarea.implementations.pherogram

Modifier and Type	Class and Description
class	PherogramArea A data area displaying a trace file resulting from Sanger sequencing.

Uses of DataArea in info.bioinfweb.libralign.dataarea.implementations.sequenceindex

Subclasses of DataArea in info.bioinfweb.libralign.dataarea.implementations.sequenceindex

Modifier and Type	Class and Description
class	SequenceIndexArea A data area displaying the indices of aligned sequences.