BasicAlignmentModelView
in other ways
(e.g.See: Description
Interface | Description |
---|---|
SequenceDataAdapter<S,T> |
Classes implementing this interface provide access to the data provided by an implementation of
AlignmentModel in a different way (e.g. |
SingleSequenceDataAdapter<T> |
Adapter classes providing views of (sub-) sequences of single rows of an implementation of
AlignmentModel should implement this interface. |
Class | Description |
---|---|
AbstractBasicAlignmentModelView<T> |
All classes implementing
BasicAlignmentModelView s can inherit from this class,
which implements the access to the underlying data source. |
AbstractSingleSequenceDataAdapter<T> |
Implements basic functionality of
SingleSequenceDataAdapter . |
BioJava3SequenceAdapter<T,C extends org.biojava3.core.sequence.template.Compound> |
Adapter class that allows to access the contents of an implementation of
AlignmentModel
as a set of BioJava Sequence objects. |
CharSequenceAdapter<T> |
Adapter class that allows to access the contents of an implementation of
AlignmentModel
as a set of CharSequence s or String s. |
SingleBioJava3SequenceAdapter<T,C extends org.biojava3.core.sequence.template.Compound> |
Abstract base class for all implementations of
SingleSequenceDataAdapter that allow
to view one sequence of a AlignmentModel as a BioJava Sequence object. |
SingleCharSequenceAdapter<T> |
An adapter class allowing to view a single sequence provided by an implementation of
AlignmentModel as a CharSequence . |
StringAdapter<T> |
Returns the sequences contained in the underlying data source as strings.
|
Exception | Description |
---|---|
InvalidUnderlyingTokenException |
Exception that indicates that a token that could not be translated by a
SingleSequenceDataAdapter
was found. |
BasicAlignmentModelView
in other ways
(e.g. as String
s or BioJava Sequence
)s).