BasicAlignmentModelView in other ways
(e.g.See: Description
| Interface | Description |
|---|---|
| SequenceDataAdapter<S,T> |
Classes implementing this interface provide access to the data provided by an implementation of
AlignmentModel in a different way (e.g. |
| SingleSequenceDataAdapter<T> |
Adapter classes providing views of (sub-) sequences of single rows of an implementation of
AlignmentModel should implement this interface. |
| Class | Description |
|---|---|
| AbstractBasicAlignmentModelView<T> |
All classes implementing
BasicAlignmentModelViews can inherit from this class,
which implements the access to the underlying data source. |
| AbstractSingleSequenceDataAdapter<T> |
Implements basic functionality of
SingleSequenceDataAdapter. |
| BioJava3SequenceAdapter<T,C extends org.biojava3.core.sequence.template.Compound> |
Adapter class that allows to access the contents of an implementation of
AlignmentModel
as a set of BioJava Sequence objects. |
| CharSequenceAdapter<T> |
Adapter class that allows to access the contents of an implementation of
AlignmentModel
as a set of CharSequences or Strings. |
| SingleBioJava3SequenceAdapter<T,C extends org.biojava3.core.sequence.template.Compound> |
Abstract base class for all implementations of
SingleSequenceDataAdapter that allow
to view one sequence of a AlignmentModel as a BioJava Sequence object. |
| SingleCharSequenceAdapter<T> |
An adapter class allowing to view a single sequence provided by an implementation of
AlignmentModel as a CharSequence. |
| StringAdapter<T> |
Returns the sequences contained in the underlying data source as strings.
|
| Exception | Description |
|---|---|
| InvalidUnderlyingTokenException |
Exception that indicates that a token that could not be translated by a
SingleSequenceDataAdapter
was found. |
BasicAlignmentModelView in other ways
(e.g. as Strings or BioJava Sequence)s).