Uses of Class
info.bioinfweb.libralign.model.implementations.BioJava3SequenceAlignmentModel

Packages that use BioJava3SequenceAlignmentModel

Package	Description
info.bioinfweb.libralign.model.implementations	Contains common implementations of AlignmentModel which are part of LibrAlign.

Uses of BioJava3SequenceAlignmentModel in info.bioinfweb.libralign.model.implementations

Methods in info.bioinfweb.libralign.model.implementations that return BioJava3SequenceAlignmentModel

Modifier and Type	Method and Description
static <C extends org.biojava3.core.sequence.template.Compound> BioJava3SequenceAlignmentModel<org.biojava3.alignment.template.AlignedSequence<? extends org.biojava3.core.sequence.template.Sequence<C>,C>,C>	BioJava3SequenceAlignmentModel.newInstanceFromProfile(org.biojava3.alignment.template.Profile<org.biojava3.core.sequence.template.Sequence<C>,C> underlyingModel, java.lang.String namePrefix, CharacterStateSetType setType, boolean spaceForGap) Creates a new instance of this class and copies the sequences contained underlyingModel to it.
static <C extends org.biojava3.core.sequence.template.Compound> BioJava3SequenceAlignmentModel<org.biojava3.alignment.template.AlignedSequence<? extends org.biojava3.core.sequence.template.Sequence<C>,C>,C>	BioJava3SequenceAlignmentModel.newInstanceFromProfile(org.biojava3.alignment.template.Profile<org.biojava3.core.sequence.template.Sequence<C>,C> underlyingModel, java.lang.String namePrefix, CharacterStateSetType setType, boolean spaceForGap, SequenceIDManager idManager, boolean reuseSequenceIDs) Creates a new instance of this class and copies the sequences contained underlyingModel to it.