Uses of Class
info.bioinfweb.libralign.model.tokenset.CharacterTokenSet

Packages that use CharacterTokenSet

Package	Description
info.bioinfweb.libralign.model.tokenset

Uses of CharacterTokenSet in info.bioinfweb.libralign.model.tokenset

Methods in info.bioinfweb.libralign.model.tokenset that return CharacterTokenSet

Modifier and Type	Method and Description
CharacterTokenSet	CharacterTokenSet.clone() Clones this instance.
static CharacterTokenSet	CharacterTokenSet.newAminoAcidInstance(boolean distinguishCase) Returns a new instance of this class containing all amino acid tokens (one letter codes), including the gap token ('-') and ambiguity codes.
static CharacterTokenSet	CharacterTokenSet.newDNAInstance(boolean distinguishCase) Returns a new instance of this class containing all nucleotide tokens, including 'T' and not 'U', the gap token ('-') and all IUPAC ambiguity codes.
static CharacterTokenSet	CharacterTokenSet.newNucleotideInstance(boolean distinguishCase) Returns a new instance of this class containing all nucleotide tokens, including both 'T' and 'U', the gap token ('-') and all IUPAC ambiguity codes.
static CharacterTokenSet	CharacterTokenSet.newRNAInstance(boolean distinguishCase) Returns a new instance of this class containing all nucleotide tokens, including 'U' and not 'T', the gap token ('-') and all IUPAC ambiguity codes.

Constructors in info.bioinfweb.libralign.model.tokenset with parameters of type CharacterTokenSet

Constructor and Description
CharacterTokenSet(CharacterTokenSet tokenSet) A constructor used to clone instances of this class.