Uses of Interface
info.bioinfweb.libralign.pherogram.distortion.PherogramDistortion

Packages that use PherogramDistortion

Package	Description
info.bioinfweb.libralign.pherogram	Contains classes related to storing and displaying a trace file from Sanger sequencing.
info.bioinfweb.libralign.pherogram.distortion

Uses of PherogramDistortion in info.bioinfweb.libralign.pherogram

Methods in info.bioinfweb.libralign.pherogram with parameters of type PherogramDistortion

Modifier and Type	Method and Description
void	PherogramPainter.paintBaseCallIndices(java.awt.Graphics2D g, int firstBaseCallIndex, int lastBaseCallIndex, double startX, double startY, PherogramDistortion distortion, double compoundWidth)
void	PherogramPainter.paintBaseCallLines(java.awt.Graphics2D g, int firstBaseCallIndex, int lastBaseCallIndex, double startX, double startY, double height, PherogramDistortion distortion)
void	PherogramPainter.paintBaseCalls(java.awt.Graphics2D g, int firstBaseCallIndex, int lastBaseCallIndex, double startX, double startY, PherogramDistortion distortion)
void	PherogramPainter.paintGaps(java.awt.Graphics2D g, int firstBaseCallIndex, int lastBaseCallIndex, double startX, double startY, double height, PherogramDistortion distortion, double compoundWidth)
double	PherogramPainter.paintTraceCurves(java.awt.Graphics2D g, int firstBaseCallIndex, int lastBaseCallIndex, double x, double y, PherogramDistortion distortion, double compoundWidth)

Uses of PherogramDistortion in info.bioinfweb.libralign.pherogram.distortion

Classes in info.bioinfweb.libralign.pherogram.distortion that implement PherogramDistortion

Modifier and Type	Class and Description
class	ScaledPherogramDistortion Stores scale and gap pattern for each base call index of a pherogram.
class	UnscaledPherogramDistortion Implementation that does not scale the pherogram or insert any gaps.