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2020-11-26: Version 3.4.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.2020-02-11: Software developed in our group presented at the WWU reproducible research workshop
We presented how our software components help to improve reproducibility of scientific workflows at a workshop organized by the WWU "Opening Reproducible Research" project (o2r) team.This press release provides an overview on the results of the workshop.
2019-08-09: Maintenance work on our servers
Due to maintenance work in our servers, our web services may be unavailable from time to time for several minutes during the following time period:Fri, 2019-08-09, 17:00 CEST - Mon, 2019-08-12, 8:00 CEST
2019-07-22: Paper on JPhyloIO published
Our library for reading and writing of phylogenetic file formats through one event-based interface was published in BMC Bioinformatics.St√∂ver BC, Wiechers S, M√?ller KF: JPhyloIO: A Java library for event-based reading and writing of different phylogenetic file formats through a common interface. BMC Bioinformatics 2019, 20:401
2019-06-12: Version 1.0.0 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.The initial feature set is now complete and JPhyloIO is now available for public production use under the major version number 1.
2019-04-26: Version 2.15.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
2019-04-26: Version 0.5.4 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
2019-04-26: Version 3.3.1 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
2019-03-20: Version 0.5.3 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.2019-03-12: Web service for viewing JPhyloIO event streams
A web service for JPhyloIO that lists event streams produced from any phylogenetic input file is now available as part of the JPhyloIO documentation. It allows developers to easily inspect the stream of linear data events JPhyloIO produces from a MSA or tree document. This is helpful for getting started with JPhyloIO or for debugging purposes.Try it here
2018-11-29: New version of PhyDE 2 available
A new version of PhyDE 2 is now available. It allows to edit several multiple sequence alignments at the same time.
2018-11-15: New version of PhyDE 2 available
A new version of PhyDE 2 with reverse complement functionality is now available.
2018-11-15: Version 3.3.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
2018-05-15: First version of PhyDE 2 released
Our multiple sequence alignment editor PhyDE is currently rewritted based in the functionality of our libraries JPhyloIO and LibrAlign. A first version of this new development branch is now avaialble at http://bioinfweb.info/PhyDE2/Download .
2018-04-18: Version 1.1.0 of AlignmentComparator released
A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.This is the first feature-complete version of AlignmentComparator that now allows to compare any number of alignments and to attach notes to the comparison.
2018-04-18: Version 0.9.0 of LibrAlign released
A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
2018-03-21: Poster on the GBOL 5 web app presented at the 6th MGSE Symposium
A poster on the GBOL 5 web app is being presented at the 7th annual symposium of the M√?nster Graduate School of Evolution (MGSE).
2018-03-01: Version 1.0.0 of AlignmentComparator released
A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.This is the first feature-complete version of AlignmentComparator that now allows to compare any number of alignments and to attach notes to the comparison.
2018-02-26: Version 0.3.0 of AlignmentComparator released
A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.
2018-02-26: Version 0.8.0 of LibrAlign released
A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
2018-02-26: Version 3.0.2 of TIC released
A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.
2018-02-26: Version 0.5.2 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.It contains a bug fix for writing multiple documents in a row with the same writer.
2018-02-22: Version 0.2.0 of AlignmentComparator released
A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.
2018-02-22: Version 0.7.0 of LibrAlign released
A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
2018-02-22: Version 3.2.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.The release contains extended logging functionality.
2018-02-13: Version 0.1.0 of AlignmentComparator released
A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available. It now offers two additional comparison algorthms and supports more alignment file formats.
2018-02-13: Version 3.1.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
2018-02-13: Version 0.6.0 of LibrAlign released
A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.It includes many new features and buf fixes, among which are e.g. editing and I/O functionalities for the character set data areas or allowing multiple sequences with the same name in an alignment model.
2018-02-13: Version 0.5.1 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.It contains a bugfix in reading large sequences from NeXML.
2018-02-10: Version 3.0.1 of TIC released
A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.A bug in ScrollingTICComponent has been fixed.
2018-02-04: Version 0.5.0 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
2018-02-04: Version 3.0.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.Some changes were considered as API changes and the major version number was therefore increased.
2017-09-29: Version 0.5.0 of LibrAlign released
A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
2017-09-29: Version 3.0.0 of TIC released
A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.
2017-09-28: Version 2.4.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
2017-08-30: bioinfweb repositories on GitHub
The source codes of now six bioinfweb software projects are now available on GitHub. The repositories of TreeGraph 2, JPhyloIO, LibrAlign, bioinfweb.commons.java, AlignmentComparator and TIC are from now on synchronized with GitHub.Feedback and pull requests are welcome.
2017-08-21: bioinfweb Projects on ResearchGate
Our scientific software projects now each have their own ResearchGate page. Follow the projects to receive updates on new releases, features and publications. Each project also contains a section to ask questions about the software.The following project pages are now availabble:
2017-08-17: bioinfweb repositories on GitHub
The source codes of JPhyloIO are now synchronized with GitHub.Sources of the other bioinfweb projects will follow soon. Feedback and pull requests are welcome.
2017-06-26: Version 2.14.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.2017-05-22: New article published
Our article Barr√© P, St√∂ver BC, M√?ller KF, Steinhage V: LeafNet: A computer vision system for automatic plant species identification was published in Ecological Informatics.
2017-05-13: Version 0.4.0 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
2017-05-13: Version 2.3.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.2017-04-07: Maintenance work on our servers on April, 7th
Our servers are undergoing maintenance work between 09:00 and 14:00 CEST (April, 7th 2017). During that time the served websites of the WWU and the bioinfweb project might be temporarily unavailable.EDIT: Maintenance work was successful.
2017-04-05: Maintenance work on our servers on April, 5th
Our servers are undergoing maintenance work between 13:00 and 17:00 CEST (April, 5th 2017). During that time the served websites of the WWU and the bioinfweb project might be temporary unavailable.EDIT: Maintenance work was successful. More maintenance work will be happening later this week, which will be announced separately.
2017-03-24: Poster on metadata processing in JPhyloIO, LibrAlign and TreeGraph 2 presented at the 6th MGSE Symposium
A poster on the use of externally defined ontologies in metadata processing in JPhyloIO, LibrAlign and TreeGraph 2 is being presented at the 6. annual symposium of the M√?nster Graduate School of Evolution (MGSE).
2017-01-18: Version 0.4.0 of LibrAlign released
A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
2017-01-17: Version 2.0.0 of TIC released
A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.
2017-01-09: Version 2.12.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.It offers new functionality in calculating node/branch data and visualizing metadata.
2017-01-09: Version 2.2.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
2016-12-21: Version 2.12.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
2016-12-14: Version 0.3.0 of JPhyloIO released
A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
2016-12-09: Version 2.1.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.2016-12-02: Demo Applications for JPhyloIO available
As a part of the documentation of our Java library JPhyloIO for event-based reading and writing of phylogenetic data, we now provide four demo applications that allow to quickly get started and show the different features.
2016-11-14: bioinfweb on twitter
bioinfweb is now on twitter. You can find news on releases and other events at twitter.com/bioinfweb.
2016-11-09: Version 0.2.0 of JPhyoIO released
A new version (0.2.0) of our library for reading and writing of phylogenetic file formats through one event-based interface was released. The current API now contains all currently planned functionality and is expected to remain mostly unchanged compared to the upcoming release of version 1.0.0, but we still await possible reviever comments on the related paper.
2016-11-09: Version 2.0.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
2016-09-20: Version 2.11.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.2016-09-08: New article published
Our following new article has been published:Grimm J, Hoffmann M, St√∂ver BC, M√?ller KF, Steinhage V: Image-Based Identification of Plant Species Using a Model-Free Approach and Active Learning. In Friedrich G, Helmert M, Wotawa F: KI 2016: Advances in Artificial Intelligence, 2016, Springer International Publishing; 169-176
2016-09-05: Version 0.0.0 of JPhyloIO released and presented at ECCB
The first version (0.0.0) of our library for reading and writing of phylogenetic file formats through one event-based interface was released and presented on a poster at the ECCB 2016.
2016-07-26: Version 2.10.1 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from [LINK http://treegraph.bioinfweb.info/Download http://treegraph.bioinfweb.info/Download
2016-07-12: Version 2.10.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
2016-04-07: Version 2.9.2 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
2016-03-24: Version 2.9.1 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
2016-03-06: Version 2.8.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
2015-11-02: Version 2.7.1 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
2015-10-20: Version 2.6.0 of TreeGraph 2 released and presented at MGSE Symposium
A new version (2.6.0) of our editor for phylogenetic trees was released. Additionally new features were presented on a poster at the 5th annual M√?nster Graduate School of Evolution Symposium.2015-10-12: Maintenance work on our servers on Oct, 12th 2015
Our servers are undergoing maintenance work on October, 12th 2015 between 6 a.m. and 10 a.m CEST. During that time the served websites of the WWU and the bioinfweb project might be temporary unavailable.2015-10-01: New article published
Our following new article has been published:Kilian N, Henning T, Plitzner P, M√?ller A, G√?ntsch A, St√∂ver BC, M√?ller KF, Berendsohn WG, Borsch T: Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens. Database, 2015:bav094
Our group developed the components necessary to process molecular data, including the libraries LibrAlign, JPhyloIO and TIC.
2015-09-27: Version 2.5.0 of TreeGraph 2 released and presented at GCB
A new version (2.5.0) of our editor for phylogenetic trees was released. Additionally new features were presented on a poster at the German Conference on Bioinformatics 2015.2015-02-20: Maintenance work on our servers on Feb 20th and 21st
Our servers are undergoing maintenance work this weekend. During that time the served websites of the WWU and the bioinfweb project might be temporary unavailable.
2015-02-13: Version 2.4.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
2015-02-11: Version 1.1.0 of bioinfweb.commons.java released
A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU GPL 4.
2015-01-12: Version 0.3.0 of LibrAlign released
A new alpha version of our Java alignment GUI library LibrAlign has been released. It was presented at the Multiple Sequence Alignment Workshop at IPAM, UCLA (Los Angeles).
2015-01-12: AlignmentComparator was presented at the MSA Workshop at IPAM, UCLA
Our software AlignmentComparator that allows comparing alternative MSAs of the same data set has been presented at the Multiple Sequence Alignment Workshop at IPAM (UCLA, Los Angeles).2014-11-25: Website down for maintenance on Nov 26th, 2014
Due to maintenance works on the power supply of our server this website will be offline from Nov 25th, 2014 11 p.m. until Nov 26th, 2014 8 a.m. CET.Internal services offered by our servers will also be affected.
2014-11-19: Version 2.3.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
2014-11-14: Version 2.2.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
2014-09-30: LibrAlign presented at the GCB
Our alignment GUI library LibrAlign is presented with a poster at the German Conference on Bioinformatics 2014 which can also be viewed online here.
2014-09-29: Version 0.2.0 of LibrAlign released
A new alpha version of our Java library for GUI components dealing with multiple sequence alignment and associated raw and meta data is available for download under http://bioinfweb.info/LibrAlign.
2014-09-28: First public release of the Java library bioinfweb.commons.java released.
Since 2008 several components that have been developed for different bioinfweb projects and have the potential to be of general use have been shared among the projects in the Java library bioinfweb.commons.java. This library is from now on also publicly available under commons.bioinfweb.info/Java/.
2014-09-04: Version 2.1.0 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download2014-08-16: Website down for maintenance on Aug 16th, 2014
Due to maintenance works on the optical fiber network of the M√?nster university this website will be offline on Aug 16th, 2014 from 7 a.m until 4 p.m..Internal services offered by our servers will also be affected.
2014-08-03: Version 2.0.56 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
2014-07-30: Version 2.0.55 of TreeGraph released
A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
2014-07-02: Version 0.1.0 of LibrAlign released
A new alpha version of our Java library for GUI components dealing with multiple sequence alignment and associated raw and meta data is available for download under http://bioinfweb.info/LibrAlign.
2014-06-30: First version of AlignmentComparator released and presented at the 4th MGSE symposium
The first version of our new software project AlignmentComparator - an application to efficiently visualize and annotate differences between alternative multiple sequence alignments - has been released. It can be downloaded under bioinfweb.info/AlignmentComparator.The new software has also been presented with a poster during the 4th annual M√?nster Graduate School of Evolution Symposium which can also be viewed online here.
