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Aug 09, 2019: Maintenance work on our servers

Due to maintenance work in our servers, our web services may be unavailable from time to time for several minutes during the following time period:

Fri, 2019-08-09, 17:00 CEST - Mon, 2019-08-12, 8:00 CEST
 

Paper on JPhyloIO published

Jul 22, 2019: Paper on JPhyloIO published

Our library for reading and writing of phylogenetic file formats through one event-based interface was published in BMC Bioinformatics.

Stöver BC, Wiechers S, Müller KF: JPhyloIO: A Java library for event-based reading and writing of different phylogenetic file formats through a common interface. BMC Bioinformatics 2019, 20:401
 

Version 1.0.0 of <i>JPhyloIO</i> released

Jun 12, 2019: Version 1.0.0 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.

The initial feature set is now complete and JPhyloIO is now available for public production use under the major version number 1.
 

Version 2.15.0 of TreeGraph released

Apr 26, 2019: Version 2.15.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
 

Version 0.5.4 of <i>JPhyloIO</i> released

Apr 26, 2019: Version 0.5.4 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
 

Version 3.3.1 of <i>bioinfweb.commons.java</i> released

Apr 26, 2019: Version 3.3.1 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

Version 0.5.3 of <i>JPhyloIO</i> released

Mar 20, 2019: Version 0.5.3 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
 

Mar 12, 2019: Web service for viewing JPhyloIO event streams

A web service for JPhyloIO that lists event streams produced from any phylogenetic input file is now available as part of the JPhyloIO documentation. It allows developers to easily inspect the stream of linear data events JPhyloIO produces from a MSA or tree document. This is helpful for getting started with JPhyloIO or for debugging purposes.

Try it here
 

New version of <i>PhyDE 2</i> available

Nov 29, 2018: New version of PhyDE 2 available

A new version of PhyDE 2 is now available. It allows to edit several multiple sequence alignments at the same time.
 

New version of <i>PhyDE 2</i> available

Nov 15, 2018: New version of PhyDE 2 available

A new version of PhyDE 2 with reverse complement functionality is now available.
 

Version 3.3.0 of <i>bioinfweb.commons.java</i> released

Nov 15, 2018: Version 3.3.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

First version of <i>PhyDE 2</i> released

May 15, 2018: First version of PhyDE 2 released

Our multiple sequence alignment editor PhyDE is currently rewritted based in the functionality of our libraries JPhyloIO and LibrAlign. A first version of this new development branch is now avaialble at http://bioinfweb.info/PhyDE2/Download .
 

Version 1.1.0 of <i>AlignmentComparator</i> released

Apr 18, 2018: Version 1.1.0 of AlignmentComparator released

A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.

This is the first feature-complete version of AlignmentComparator that now allows to compare any number of alignments and to attach notes to the comparison.
 

Version 0.9.0 of <i>LibrAlign</i> released

Apr 18, 2018: Version 0.9.0 of LibrAlign released

A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
 

Poster on the GBOL 5 web app presented at the 6th MGSE Symposium

Mar 21, 2018: Poster on the GBOL 5 web app presented at the 6th MGSE Symposium

A poster on the GBOL 5 web app is being presented at the 7th annual symposium of the Münster Graduate School of Evolution (MGSE).
 

Version 1.0.0 of <i>AlignmentComparator</i> released

Mar 01, 2018: Version 1.0.0 of AlignmentComparator released

A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.

This is the first feature-complete version of AlignmentComparator that now allows to compare any number of alignments and to attach notes to the comparison.
 

Version 0.3.0 of <i>AlignmentComparator</i> released

Feb 26, 2018: Version 0.3.0 of AlignmentComparator released

A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.
 

Version 0.8.0 of <i>LibrAlign</i> released

Feb 26, 2018: Version 0.8.0 of LibrAlign released

A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
 

Version 3.0.2 of <i>TIC</i> released

Feb 26, 2018: Version 3.0.2 of TIC released

A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.
 

Version 0.5.2 of <i>JPhyloIO</i> released

Feb 26, 2018: Version 0.5.2 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.

It contains a bug fix for writing multiple documents in a row with the same writer.
 

Version 0.2.0 of <i>AlignmentComparator</i> released

Feb 22, 2018: Version 0.2.0 of AlignmentComparator released

A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available.
 

Version 0.7.0 of <i>LibrAlign</i> released

Feb 22, 2018: Version 0.7.0 of LibrAlign released

A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
 

Version 3.2.0 of <i>bioinfweb.commons.java</i> released

Feb 22, 2018: Version 3.2.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.

The release contains extended logging functionality.
 

Version 0.1.0 of <i>AlignmentComparator</i> released

Feb 13, 2018: Version 0.1.0 of AlignmentComparator released

A new version of our application to visually compare alternatibe multiple sequence alignments of the same dataset is available. It now offers two additional comparison algorthms and supports more alignment file formats.
 

Version 3.1.0 of <i>bioinfweb.commons.java</i> released

Feb 13, 2018: Version 3.1.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

Version 0.6.0 of <i>LibrAlign</i> released

Feb 13, 2018: Version 0.6.0 of LibrAlign released

A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.

It includes many new features and buf fixes, among which are e.g. editing and I/O functionalities for the character set data areas or allowing multiple sequences with the same name in an alignment model.
 

Version 0.5.1 of <i>JPhyloIO</i> released

Feb 13, 2018: Version 0.5.1 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.

It contains a bugfix in reading large sequences from NeXML.
 

Version 3.0.1 of <i>TIC</i> released

Feb 10, 2018: Version 3.0.1 of TIC released

A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.

A bug in ScrollingTICComponent has been fixed.
 

Version 0.5.0 of <i>JPhyloIO</i> released

Feb 04, 2018: Version 0.5.0 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
 

Version 3.0.0 of <i>bioinfweb.commons.java</i> released

Feb 04, 2018: Version 3.0.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.

Some changes were considered as API changes and the major version number was therefore increased.
 

Version 0.5.0 of <i>LibrAlign</i> released

Sep 29, 2017: Version 0.5.0 of LibrAlign released

A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
 

Version 3.0.0 of <i>TIC</i> released

Sep 29, 2017: Version 3.0.0 of TIC released

A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.
 

Version 2.4.0 of <i>bioinfweb.commons.java</i> released

Sep 28, 2017: Version 2.4.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

bioinfweb repositories on GitHub

Aug 30, 2017: bioinfweb repositories on GitHub

The source codes of now six bioinfweb software projects are now available on GitHub. The repositories of TreeGraph 2, JPhyloIO, LibrAlign, bioinfweb.commons.java, AlignmentComparator and TIC are from now on synchronized with GitHub.

Feedback and pull requests are welcome.
 

bioinfweb Projects on ResearchGate

Aug 21, 2017: bioinfweb Projects on ResearchGate

Our scientific software projects now each have their own ResearchGate page. Follow the projects to receive updates on new releases, features and publications. Each project also contains a section to ask questions about the software.

The following project pages are now availabble:
 

bioinfweb repositories on GitHub

Aug 17, 2017: bioinfweb repositories on GitHub

The source codes of JPhyloIO are now synchronized with GitHub.

Sources of the other bioinfweb projects will follow soon. Feedback and pull requests are welcome.
 

Version 2.14.0 of TreeGraph released

Jun 26, 2017: Version 2.14.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
 

May 22, 2017: New article published

Our article Barré P, Stöver BC, Müller KF, Steinhage V: LeafNet: A computer vision system for automatic plant species identification was published in Ecological Informatics.
 

Version 0.4.0 of <i>JPhyloIO</i> released

May 13, 2017: Version 0.4.0 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
 

Version 2.3.0 of <i>bioinfweb.commons.java</i> released

May 13, 2017: Version 2.3.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

Apr 07, 2017: Maintenance work on our servers on April, 7th

Our servers are undergoing maintenance work between 09:00 and 14:00 CEST (April, 7th 2017). During that time the served websites of the WWU and the bioinfweb project might be temporarily unavailable.

EDIT: Maintenance work was successful.
 

Apr 05, 2017: Maintenance work on our servers on April, 5th

Our servers are undergoing maintenance work between 13:00 and 17:00 CEST (April, 5th 2017). During that time the served websites of the WWU and the bioinfweb project might be temporary unavailable.

EDIT: Maintenance work was successful. More maintenance work will be happening later this week, which will be announced separately.
 

Poster on metadata processing in JPhyloIO, LibrAlign and TreeGraph 2 presented at the 6th MGSE Symposium

Mar 24, 2017: Poster on metadata processing in JPhyloIO, LibrAlign and TreeGraph 2 presented at the 6th MGSE Symposium

A poster on the use of externally defined ontologies in metadata processing in JPhyloIO, LibrAlign and TreeGraph 2 is being presented at the 6. annual symposium of the Münster Graduate School of Evolution (MGSE).
 

Version 0.4.0 of <i>LibrAlign</i> released

Jan 18, 2017: Version 0.4.0 of LibrAlign released

A new version of our GUI library providing powerful components for displaying and editing multiple sequence alignments and attached raw- and metadata was released.
 

Version 2.0.0 of <i>TIC</i> released

Jan 17, 2017: Version 2.0.0 of TIC released

A new version of our Java library for creating toolkit independent GUI components to be used with Swing and SWT was released.
 

Version 2.12.0 of TreeGraph released

Jan 09, 2017: Version 2.12.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.

It offers new functionality in calculating node/branch data and visualizing metadata.
 

Version 2.2.0 of <i>bioinfweb.commons.java</i> released

Jan 09, 2017: Version 2.2.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

Version 2.12.0 of TreeGraph released

Dec 21, 2016: Version 2.12.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
 

Version 0.3.0 of <i>JPhyloIO</i> released

Dec 14, 2016: Version 0.3.0 of JPhyloIO released

A new version of our library for reading and writing of phylogenetic file formats through one event-based interface was released.
 

Version 2.1.0 of <i>bioinfweb.commons.java</i> released

Dec 09, 2016: Version 2.1.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

Dec 02, 2016: Demo Applications for JPhyloIO available

As a part of the documentation of our Java library JPhyloIO for event-based reading and writing of phylogenetic data, we now provide four demo applications that allow to quickly get started and show the different features.
 

bioinfweb on twitter

Nov 14, 2016: bioinfweb on twitter

bioinfweb is now on twitter. You can find news on releases and other events at twitter.com/bioinfweb.
 

Version 0.2.0 of <i>JPhyoIO</i> released

Nov 09, 2016: Version 0.2.0 of JPhyoIO released

A new version (0.2.0) of our library for reading and writing of phylogenetic file formats through one event-based interface was released. The current API now contains all currently planned functionality and is expected to remain mostly unchanged compared to the upcoming release of version 1.0.0, but we still await possible reviever comments on the related paper.
 

Version 2.0.0 of <i>bioinfweb.commons.java</i> released

Nov 09, 2016: Version 2.0.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU LGPL 3.
 

Version 2.11.0 of TreeGraph released

Sep 20, 2016: Version 2.11.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
 

Sep 08, 2016: New article published

Our following new article has been published:

Grimm J, Hoffmann M, Stöver BC, Müller KF, Steinhage V: Image-Based Identification of Plant Species Using a Model-Free Approach and Active Learning. In Friedrich G, Helmert M, Wotawa F: KI 2016: Advances in Artificial Intelligence, 2016, Springer International Publishing; 169-176
 

Version 0.0.0 of JPhyloIO released and presented at ECCB

Sep 05, 2016: Version 0.0.0 of JPhyloIO released and presented at ECCB

The first version (0.0.0) of our library for reading and writing of phylogenetic file formats through one event-based interface was released and presented on a poster at the ECCB 2016.
 

Version 2.10.1 of TreeGraph released

Jul 26, 2016: Version 2.10.1 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from [LINK http://treegraph.bioinfweb.info/Download http://treegraph.bioinfweb.info/Download
 

Version 2.10.0 of TreeGraph released

Jul 12, 2016: Version 2.10.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

Version 2.9.2 of TreeGraph released

Apr 07, 2016: Version 2.9.2 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

Version 2.9.1 of TreeGraph released

Mar 24, 2016: Version 2.9.1 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

Version 2.8.0 of TreeGraph released

Mar 06, 2016: Version 2.8.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

Version 2.7.1 of TreeGraph released

Nov 02, 2015: Version 2.7.1 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

Version 2.6.0 of TreeGraph 2 released and presented at MGSE Symposium

Oct 20, 2015: Version 2.6.0 of TreeGraph 2 released and presented at MGSE Symposium

A new version (2.6.0) of our editor for phylogenetic trees was released. Additionally new features were presented on a poster at the 5th annual Münster Graduate School of Evolution Symposium.
 

Oct 12, 2015: Maintenance work on our servers on Oct, 12th 2015

Our servers are undergoing maintenance work on October, 12th 2015 between 6 a.m. and 10 a.m CEST. During that time the served websites of the WWU and the bioinfweb project might be temporary unavailable.
 

Oct 01, 2015: New article published

Our following new article has been published:

Kilian N, Henning T, Plitzner P, Müller A, Güntsch A, Stöver BC, Müller KF, Berendsohn WG, Borsch T: Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens. Database, 2015:bav094

Our group developed the components necessary to process molecular data, including the libraries LibrAlign, JPhyloIO and TIC.
 

Version 2.5.0 of TreeGraph 2 released and presented at GCB

Sep 27, 2015: Version 2.5.0 of TreeGraph 2 released and presented at GCB

A new version (2.5.0) of our editor for phylogenetic trees was released. Additionally new features were presented on a poster at the German Conference on Bioinformatics 2015.
 

Feb 20, 2015: Maintenance work on our servers on Feb 20th and 21st

Our servers are undergoing maintenance work this weekend. During that time the served websites of the WWU and the bioinfweb project might be temporary unavailable.
 

Version 2.4.0 of TreeGraph released

Feb 13, 2015: Version 2.4.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
 

Version 1.1.0 of <i>bioinfweb.commons.java</i> released

Feb 11, 2015: Version 1.1.0 of bioinfweb.commons.java released

A new version of our Java library bioinfweb.commons has been released. It consists of different modules to be used in bioinformatics or in a general purpose that are made available under GNU GPL 4.
 

Version 0.3.0 of LibrAlign released

Jan 12, 2015: Version 0.3.0 of LibrAlign released

A new alpha version of our Java alignment GUI library LibrAlign has been released. It was presented at the Multiple Sequence Alignment Workshop at IPAM, UCLA (Los Angeles).
 

AlignmentComparator was presented at the MSA Workshop at IPAM, UCLA

Jan 12, 2015: AlignmentComparator was presented at the MSA Workshop at IPAM, UCLA

Our software AlignmentComparator that allows comparing alternative MSAs of the same data set has been presented at the Multiple Sequence Alignment Workshop at IPAM (UCLA, Los Angeles).
 

Nov 25, 2014: Website down for maintenance on Nov 26th, 2014

Due to maintenance works on the power supply of our server this website will be offline from Nov 25th, 2014 11 p.m. until Nov 26th, 2014 8 a.m. CET.

Internal services offered by our servers will also be affected.
 

Version 2.3.0 of TreeGraph released

Nov 19, 2014: Version 2.3.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

Version 2.2.0 of TreeGraph released

Nov 14, 2014: Version 2.2.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

LibrAlign presented at the GCB

Sep 30, 2014: LibrAlign presented at the GCB

Our alignment GUI library LibrAlign is presented with a poster at the German Conference on Bioinformatics 2014 which can also be viewed online here.
 

Version 0.2.0 of LibrAlign released

Sep 29, 2014: Version 0.2.0 of LibrAlign released

A new alpha version of our Java library for GUI components dealing with multiple sequence alignment and associated raw and meta data is available for download under http://bioinfweb.info/LibrAlign.
 

First public release of the Java library <i>bioinfweb.commons.java</i> released.

Sep 28, 2014: First public release of the Java library bioinfweb.commons.java released.

Since 2008 several components that have been developed for different bioinfweb projects and have the potential to be of general use have been shared among the projects in the Java library bioinfweb.commons.java. This library is from now on also publicly available under commons.bioinfweb.info/Java/.
 

Version 2.1.0 of TreeGraph released

Sep 04, 2014: Version 2.1.0 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download
 

Aug 16, 2014: Website down for maintenance on Aug 16th, 2014

Due to maintenance works on the optical fiber network of the Münster university this website will be offline on Aug 16th, 2014 from 7 a.m until 4 p.m..

Internal services offered by our servers will also be affected.
 

Version 2.0.56 of TreeGraph released

Aug 03, 2014: Version 2.0.56 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
 

Version 2.0.55 of TreeGraph released

Jul 30, 2014: Version 2.0.55 of TreeGraph released

A new version of our phylogenetic tree editor can be downloaded from http://treegraph.bioinfweb.info/Download.
 

Version 0.1.0 of LibrAlign released

Jul 02, 2014: Version 0.1.0 of LibrAlign released

A new alpha version of our Java library for GUI components dealing with multiple sequence alignment and associated raw and meta data is available for download under http://bioinfweb.info/LibrAlign.
 

First version of AlignmentComparator released and presented at the 4th MGSE symposium

Jun 30, 2014: First version of AlignmentComparator released and presented at the 4th MGSE symposium

The first version of our new software project AlignmentComparator - an application to efficiently visualize and annotate differences between alternative multiple sequence alignments - has been released. It can be downloaded under bioinfweb.info/AlignmentComparator.

The new software has also been presented with a poster during the 4th annual Münster Graduate School of Evolution Symposium which can also be viewed online here.
 

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