Uses of Interface
info.bioinfweb.jphyloio.dataadapters.ObjectListDataAdapter

Packages that use ObjectListDataAdapter

Package	Description
info.bioinfweb.jphyloio.dataadapters	Contains adapter interfaces that should be implemented by adapters mediating between the business model of an application and implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.dataadapters.implementations	Contains some basic (abstract) implementations of JPhyloIOEventWriter.
info.bioinfweb.jphyloio.dataadapters.implementations.store	Contains implementations of data adapters that directly store their modeled data in mutable lists or maps instead of delegating to an application business model.
info.bioinfweb.jphyloio.formats.nexus	Contains classes for reading from and writing to streams/files in Nexus format.

Uses of ObjectListDataAdapter in info.bioinfweb.jphyloio.dataadapters

Subinterfaces of ObjectListDataAdapter in info.bioinfweb.jphyloio.dataadapters

Modifier and Type	Interface and Description
interface	OTUListDataAdapter Allows to access data from the application business model that make up an OTU list.

Methods in info.bioinfweb.jphyloio.dataadapters that return ObjectListDataAdapter

Modifier and Type	Method and Description
ObjectListDataAdapter<CharacterDefinitionEvent>	MatrixDataAdapter.getCharacterDefinitions(ReadWriteParameterMap parameters) Returns a list of character definitions for the matrix modeled by this instance.
ObjectListDataAdapter<LinkedLabeledIDEvent>	MatrixDataAdapter.getCharacterSets(ReadWriteParameterMap parameters) Returns a list of character sets defined for the matrix modeled by this instance.
ObjectListDataAdapter<EdgeEvent>	TreeNetworkDataAdapter.getEdges(ReadWriteParameterMap parameters) Returns the set of edges contained in this tree or network.
ObjectListDataAdapter<LinkedLabeledIDEvent>	TreeNetworkDataAdapter.getNodeEdgeSets(ReadWriteParameterMap parameters) Returns a list of node-and-edge-sets defined for the tree modeled by this instance.
ObjectListDataAdapter<NodeEvent>	TreeNetworkDataAdapter.getNodes(ReadWriteParameterMap parameters) Returns the set of nodes contained in this tree or network.
ObjectListDataAdapter<LinkedLabeledIDEvent>	OTUListDataAdapter.getOTUSets(ReadWriteParameterMap parameters) Returns a list of OTU sets defined for the OTU list modeled by this instance.
ObjectListDataAdapter<LinkedLabeledIDEvent>	MatrixDataAdapter.getSequenceSets(ReadWriteParameterMap parameters) Returns a list of sequence sets defined for the matrix modeled by this instance.
ObjectListDataAdapter<TokenSetDefinitionEvent>	MatrixDataAdapter.getTokenSets(ReadWriteParameterMap parameters) Returns a list of token sets defined for the matrix modeled by this instance.
ObjectListDataAdapter<LinkedLabeledIDEvent>	TreeNetworkGroupDataAdapter.getTreeSets(ReadWriteParameterMap parameters) Returns a list of tree sets defined for the tree-network-group modeled by this instance.

Uses of ObjectListDataAdapter in info.bioinfweb.jphyloio.dataadapters.implementations

Classes in info.bioinfweb.jphyloio.dataadapters.implementations that implement ObjectListDataAdapter

Modifier and Type	Class and Description
class	EmptyObjectListDataAdapter<E extends JPhyloIOEvent> Empty implementation of ObjectListDataAdapter.
class	UndefinedOTUListDataAdapter

Methods in info.bioinfweb.jphyloio.dataadapters.implementations that return ObjectListDataAdapter

Modifier and Type	Method and Description
ObjectListDataAdapter<CharacterDefinitionEvent>	NoCharDefsNoSetsMatrixDataAdapter.getCharacterDefinitions(ReadWriteParameterMap parameters) Default implementation that always returns an empty object list adapter.
ObjectListDataAdapter<LinkedLabeledIDEvent>	NoCharDefsNoSetsMatrixDataAdapter.getCharacterSets(ReadWriteParameterMap parameters) Default implementation that always returns an empty object list adapter
ObjectListDataAdapter<LinkedLabeledIDEvent>	NoSetsTreeNetworkDataAdapter.getNodeEdgeSets(ReadWriteParameterMap parameters) Default implementation that always returns an empty object list adapter.
ObjectListDataAdapter<LinkedLabeledIDEvent>	UndefinedOTUListDataAdapter.getOTUSets(ReadWriteParameterMap parameters)
ObjectListDataAdapter<LinkedLabeledIDEvent>	NoCharDefsNoSetsMatrixDataAdapter.getSequenceSets(ReadWriteParameterMap parameters) Default implementation that always returns an empty object list adapter.
ObjectListDataAdapter<TokenSetDefinitionEvent>	NoCharDefsNoSetsMatrixDataAdapter.getTokenSets(ReadWriteParameterMap parameters) Default implementation that always returns an empty object list adapter.
ObjectListDataAdapter<LinkedLabeledIDEvent>	NoSetsTreeNetworkGroupDataAdapter.getTreeSets(ReadWriteParameterMap parameters) Default implementation that always returns an empty object list adapter.

Uses of ObjectListDataAdapter in info.bioinfweb.jphyloio.dataadapters.implementations.store

Classes in info.bioinfweb.jphyloio.dataadapters.implementations.store that implement ObjectListDataAdapter

Modifier and Type	Class and Description
class	StoreObjectListDataAdapter<E extends LabeledIDEvent>
class	StoreOTUListDataAdapter

Methods in info.bioinfweb.jphyloio.dataadapters.implementations.store that return ObjectListDataAdapter

Modifier and Type	Method and Description
ObjectListDataAdapter<LinkedLabeledIDEvent>	StoreTreeNetworkDataAdapter.getNodeEdgeSets(ReadWriteParameterMap parameters)

Uses of ObjectListDataAdapter in info.bioinfweb.jphyloio.formats.nexus

Methods in info.bioinfweb.jphyloio.formats.nexus that return ObjectListDataAdapter

Modifier and Type	Method and Description
protected abstract ObjectListDataAdapter<LinkedLabeledIDEvent>	AbstractNexusSetWriter.getSets(ElementDataAdapter<? extends LabeledIDEvent> dataSource)