info.bioinfweb.jphyloio.dataadapters.implementations.store

Class StoreTreeNetworkGroupDataAdapter

java.lang.Object

info.bioinfweb.jphyloio.dataadapters.implementations.store.StoreAnnotatedDataAdapter<LinkedLabeledIDEvent>

info.bioinfweb.jphyloio.dataadapters.implementations.store.StoreTreeNetworkGroupDataAdapter

All Implemented Interfaces:

AnnotatedDataAdapter, ElementDataAdapter<LinkedLabeledIDEvent>, TreeNetworkGroupDataAdapter

public class StoreTreeNetworkGroupDataAdapter
extends StoreAnnotatedDataAdapter<LinkedLabeledIDEvent>
implements TreeNetworkGroupDataAdapter

Constructor Summary

Constructors

Constructor and Description
StoreTreeNetworkGroupDataAdapter(LinkedLabeledIDEvent treeOrNetworkGroupStartEvent, java.util.List<JPhyloIOEvent> annotations)

Method Summary

Modifier and Type	Method and Description
LinkedLabeledIDEvent	getStartEvent(ReadWriteParameterMap parameters) Returns the start event of this data element.
java.util.Iterator<TreeNetworkDataAdapter>	getTreeNetworkIterator(ReadWriteParameterMap parameters) Returns an iterator providing access to all trees and networks contained in the document to be written.
java.util.List<TreeNetworkDataAdapter>	getTreesAndNetworks()
StoreObjectListDataAdapter<LinkedLabeledIDEvent>	getTreeSets(ReadWriteParameterMap parameters) Returns a list of tree sets defined for the tree-network-group modeled by this instance.

Methods inherited from class info.bioinfweb.jphyloio.dataadapters.implementations.store.StoreAnnotatedDataAdapter

getAnnotations, writeMetadata

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface info.bioinfweb.jphyloio.dataadapters.AnnotatedDataAdapter

writeMetadata

Constructor Detail

StoreTreeNetworkGroupDataAdapter

public StoreTreeNetworkGroupDataAdapter(LinkedLabeledIDEvent treeOrNetworkGroupStartEvent,
                                        java.util.List<JPhyloIOEvent> annotations)

Method Detail

getStartEvent

public LinkedLabeledIDEvent getStartEvent(ReadWriteParameterMap parameters)

Description copied from interface: ElementDataAdapter

Returns the start event of this data element. The returned event can be used to determine the label and ID of the modeled data element or an optionally linked data element.

Specified by:

getStartEvent in interface ElementDataAdapter<LinkedLabeledIDEvent>

Parameters:

parameters - the parameter map of the calling writer that provides context information for the data request

Returns:

the start event of this data element

getTreeNetworkIterator

public java.util.Iterator<TreeNetworkDataAdapter> getTreeNetworkIterator(ReadWriteParameterMap parameters)

Description copied from interface: TreeNetworkGroupDataAdapter

Returns an iterator providing access to all trees and networks contained in the document to be written.

Specified by:

getTreeNetworkIterator in interface TreeNetworkGroupDataAdapter

Parameters:

parameters - the parameter map of the calling writer that provides context information for the data request

Returns:

the iterator (Maybe empty but not null.)

getTreesAndNetworks

public java.util.List<TreeNetworkDataAdapter> getTreesAndNetworks()

getTreeSets

public StoreObjectListDataAdapter<LinkedLabeledIDEvent> getTreeSets(ReadWriteParameterMap parameters)

Description copied from interface: TreeNetworkGroupDataAdapter

Returns a list of tree sets defined for the tree-network-group modeled by this instance.

Specified by:

getTreeSets in interface TreeNetworkGroupDataAdapter

Parameters:

parameters - the parameter map of the calling writer that provides context information for the data request

Returns:

a (possibly empty) list of tree sets