Package | Description |
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info.bioinfweb.jphyloio.events |
Contains implementations of JPhyloIO events, triggered during event based parsing.
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info.bioinfweb.jphyloio.events.meta |
Contains event classes that model metadata, as well as related implementations.
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Modifier and Type | Class and Description |
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class |
CharacterDefinitionEvent
Event that indicates a defined character (alignment column).
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class |
CharacterSetIntervalEvent
Event that indicates that new information on a character set has been read.
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class |
CommentEvent
Event that indicates that a comment has been parsed at the current position or within the data the last
non-comment event has been parsed from.
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class |
ContinuedEvent
Base class for events that have a content that may be split across separate subsequent events, if it is large.
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class |
EdgeEvent
Event indicating an edge in a tree or network.
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class |
LabeledEvent |
class |
LabeledIDEvent
Event that indicate data objects that carry an unique ID and a label.
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class |
LinkedLabeledIDEvent
Instances of this class model data elements with an ID and an optional label, that link another data
element in a phylogenetic document.
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class |
NodeEvent
Event indicating a node in a tree or network.
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class |
PartEndEvent
Indicates the end of a part of a sequence or character set definition.
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class |
SequenceTokensEvent
Indicates that one or more sequence tokens have been read from an alignment.
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class |
SetElementEvent
Event object that models an ID-based link to an object that is contained in set.
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class |
SingleSequenceTokenEvent |
class |
SingleTokenDefinitionEvent
Event that indicates the definition of a single new valid token that could be contained in a sequence
of the current alignment.
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class |
TokenSetDefinitionEvent
Event that indicates that a (predefined) definition of a character state set was found in the parsed file.
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class |
UnknownCommandEvent
Event to be fired, if an unknown command was found (e.g.
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Modifier and Type | Method and Description |
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static ConcreteJPhyloIOEvent |
ConcreteJPhyloIOEvent.createEndEvent(EventContentType contentType)
Creates a new instance of this class with the topology type
EventTopologyType.END - |
Modifier and Type | Class and Description |
---|---|
class |
LiteralMetadataContentEvent
This event represents a value of a literal metadata and is therefore always nested inside start and end events of the type
EventContentType.LITERAL_META . |
class |
LiteralMetadataEvent
Indicates that literal metadata is modeled at the current position of the document (event stream).
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class |
ResourceMetadataEvent
Indicates that metadata linking a RDF resource has been encountered at the current position of the document.
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