| Package | Description |
|---|---|
| info.bioinfweb.jphyloio.exception |
Contains exceptions that are of general use in JPhyloIO.
|
| info.bioinfweb.jphyloio.formats.newick |
Contains classes for reading from and writing to streams/files in Newick tree format.
|
| info.bioinfweb.jphyloio.formats.nexml |
Contains classes for reading from and writing to streams/files in NeXML format.
|
| info.bioinfweb.jphyloio.formats.nexml.elementreader |
Contains implementations of
XMLElementReader used by
NeXMLEventReader. |
| info.bioinfweb.jphyloio.formats.nexml.receivers |
Contains implementations for
JPhyloIOEventReceiver necessary for writing
NeXML. |
| info.bioinfweb.jphyloio.formats.phyloxml |
Contains classes for reading from and writing to streams/files in PhyloXML format.
|
| info.bioinfweb.jphyloio.formats.phyloxml.receivers |
Contains implementations for
JPhyloIOEventReceiver necessary for writing
PhyloXML. |
| info.bioinfweb.jphyloio.formats.xml |
Contains classes implementing shared functionality for reading from and writing to streams/files in XML formats.
|
| info.bioinfweb.jphyloio.formats.xml.elementreaders |
Contains general (abstract) implementations of
XMLElementReader used by
readers of XML formats. |
| Class and Description |
|---|
| IllegalEventException
This exception in thrown by implementations of
JPhyloIOEventReceiver and indicates that a data adapter passed
an event that is illegal at the current position according to the grammar defined in the documentation of
JPhyloIOEventReader. |
| InconsistentAdapterDataException
Exception which is thrown by an instance of
JPhyloIOEventWriter if the data in the specified DocumentDataAdapter
or one of its nested adapter classes is inconsistent. |
| JPhyloIOReaderException
Exception thrown by implementations of
JPhyloIOEventReader, if an error during reading occurs. |
| Class and Description |
|---|
| JPhyloIOReaderException
Exception thrown by implementations of
JPhyloIOEventReader, if an error during reading occurs. |
| Class and Description |
|---|
| JPhyloIOWriterException
Exception thrown by implementations of
JPhyloIOEventWriter, if an error during writing occurs. |
| Class and Description |
|---|
| JPhyloIOReaderException
Exception thrown by implementations of
JPhyloIOEventReader, if an error during reading occurs. |
| Class and Description |
|---|
| JPhyloIOWriterException
Exception thrown by implementations of
JPhyloIOEventWriter, if an error during writing occurs. |
| Class and Description |
|---|
| JPhyloIOReaderException
Exception thrown by implementations of
JPhyloIOEventReader, if an error during reading occurs. |
| Class and Description |
|---|
| JPhyloIOWriterException
Exception thrown by implementations of
JPhyloIOEventWriter, if an error during writing occurs. |
| Class and Description |
|---|
| JPhyloIOReaderException
Exception thrown by implementations of
JPhyloIOEventReader, if an error during reading occurs. |
| Class and Description |
|---|
| JPhyloIOReaderException
Exception thrown by implementations of
JPhyloIOEventReader, if an error during reading occurs. |