See: Description
| Interface | Description |
|---|---|
| NewickConstants | |
| NewickReaderNodeLabelProcessor |
Classes implementing this interface are used to modify a node label read from a Newick string
(e.g., by using information from a taxon list or translation table.)
|
| NewickWriterNodeLabelProcessor |
Classes implementing this interface are used to create a node label to be written to a Newick string
from its event.
|
| Class | Description |
|---|---|
| DefaultNewickReaderNodeLabelProcessor |
Default implementation of
NewickReaderNodeLabelProcessor that returns the original name unchanged. |
| DefaultNewickWriterNodeLabelProcessor |
The node label processor used by
NewickEventWriter. |
| HotCommentDataReader |
Reads meta information from a hot comment in a Newick string like it is generated by MrBayes or BEAST.
|
| NewickEventReader |
Reads tree files in Newick format.
|
| NewickEventWriter |
Event writer for the Newick format.
|
| NewickFactory |
Reader and writer factory for the Newick format.
|
| NewickNodeEdgeEventReceiver<E extends JPhyloIOEvent> | |
| NewickScanner |
Reads Newick tokens from a stream.
|
| NewickStringReader |
Implementation to read Newick tree definitions to be used by
NewickEventReader and TreeReader. |
| NewickStringWriter |
Implementation to write Newick tree definitions to be used by
NewickEventWriter and NexusEventWriter. |
| NewickToken | |
| NewickUtils | |
| NewickUtils.ReadElement | |
| NHXUtils |
Tool method for working with NHX annotation on Newick strings.
|
| Enum | Description |
|---|---|
| NewickTokenType |