See: Description
Interface | Description |
---|---|
NewickConstants | |
NewickReaderNodeLabelProcessor |
Classes implementing this interface are used to modify a node label read from a Newick string
(e.g., by using information from a taxon list or translation table.)
|
NewickWriterNodeLabelProcessor |
Classes implementing this interface are used to create a node label to be written to a Newick string
from its event.
|
Class | Description |
---|---|
DefaultNewickReaderNodeLabelProcessor |
Default implementation of
NewickReaderNodeLabelProcessor that returns the original name unchanged. |
DefaultNewickWriterNodeLabelProcessor |
The node label processor used by
NewickEventWriter . |
HotCommentDataReader |
Reads meta information from a hot comment in a Newick string like it is generated by MrBayes or BEAST.
|
NewickEventReader |
Reads tree files in Newick format.
|
NewickEventWriter |
Event writer for the Newick format.
|
NewickFactory |
Reader and writer factory for the Newick format.
|
NewickNodeEdgeEventReceiver<E extends JPhyloIOEvent> | |
NewickScanner |
Reads Newick tokens from a stream.
|
NewickStringReader |
Implementation to read Newick tree definitions to be used by
NewickEventReader and TreeReader . |
NewickStringWriter |
Implementation to write Newick tree definitions to be used by
NewickEventWriter and NexusEventWriter . |
NewickToken | |
NewickUtils | |
NewickUtils.ReadElement | |
NHXUtils |
Tool method for working with NHX annotation on Newick strings.
|
Enum | Description |
---|---|
NewickTokenType |