Uses of Package
info.bioinfweb.jphyloio.factory

Packages that use info.bioinfweb.jphyloio.factory

Package	Description
info.bioinfweb.jphyloio.factory	Contains interfaces and general implementations for creating JPhyloIO readers and writers related to JPhyloIOReaderWriterFactory.
info.bioinfweb.jphyloio.formatinfo	Contains JPhyloIOFormatInfo and related classes that describe a format supported by JPhyloIO.
info.bioinfweb.jphyloio.formats.fasta	Contains classes for reading from and writing to streams/files in FASTA format.
info.bioinfweb.jphyloio.formats.mega	Contains classes for reading from and writing to streams/files in MEGA format.
info.bioinfweb.jphyloio.formats.newick	Contains classes for reading from and writing to streams/files in Newick tree format.
info.bioinfweb.jphyloio.formats.nexml	Contains classes for reading from and writing to streams/files in NeXML format.
info.bioinfweb.jphyloio.formats.nexus	Contains classes for reading from and writing to streams/files in Nexus format.
info.bioinfweb.jphyloio.formats.pde	Contains classes for reading from streams/files in PDE format.
info.bioinfweb.jphyloio.formats.phylip	Contains classes for reading from and writing to streams/files in Phylip format.
info.bioinfweb.jphyloio.formats.phyloxml	Contains classes for reading from and writing to streams/files in PhyloXML format.
info.bioinfweb.jphyloio.formats.xml	Contains classes implementing shared functionality for reading from and writing to streams/files in XML formats.
info.bioinfweb.jphyloio.formats.xtg	Contains classes for reading from and writing to streams/files in XTG format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.factory

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formatinfo

Class and Description
JPhyloIOContentExtensionFileFilter
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.fasta

Class and Description
AbstractSingleReaderWriterFactory
AbstractStartStringSingleFactory Abstract single format factory that implements the checkFormat() methods by testing of the read content start with a certain string, determined by AbstractStartStringSingleFactory.getExpectedStart().
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.mega

Class and Description
AbstractSingleReaderWriterFactory
AbstractStartStringSingleFactory Abstract single format factory that implements the checkFormat() methods by testing of the read content start with a certain string, determined by AbstractStartStringSingleFactory.getExpectedStart().
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.newick

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.nexml

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.nexus

Class and Description
AbstractSingleReaderWriterFactory
AbstractStartStringSingleFactory Abstract single format factory that implements the checkFormat() methods by testing of the read content start with a certain string, determined by AbstractStartStringSingleFactory.getExpectedStart().
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.pde

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.phylip

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.phyloxml

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.xml

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.

Classes in info.bioinfweb.jphyloio.factory used by info.bioinfweb.jphyloio.formats.xtg

Class and Description
AbstractSingleReaderWriterFactory
SingleReaderWriterFactory Implementations of this interface are used internally by JPhyloIOReaderWriterFactory to create reader and writer instances of a specific format.