Uses of Interface
info.bioinfweb.jphyloio.formatinfo.JPhyloIOFormatInfo

Packages that use JPhyloIOFormatInfo

Package	Description
info.bioinfweb.jphyloio.factory	Contains interfaces and general implementations for creating JPhyloIO readers and writers related to JPhyloIOReaderWriterFactory.
info.bioinfweb.jphyloio.formatinfo	Contains JPhyloIOFormatInfo and related classes that describe a format supported by JPhyloIO.
info.bioinfweb.jphyloio.formats.fasta	Contains classes for reading from and writing to streams/files in FASTA format.
info.bioinfweb.jphyloio.formats.mega	Contains classes for reading from and writing to streams/files in MEGA format.
info.bioinfweb.jphyloio.formats.newick	Contains classes for reading from and writing to streams/files in Newick tree format.
info.bioinfweb.jphyloio.formats.nexml	Contains classes for reading from and writing to streams/files in NeXML format.
info.bioinfweb.jphyloio.formats.nexus	Contains classes for reading from and writing to streams/files in Nexus format.
info.bioinfweb.jphyloio.formats.pde	Contains classes for reading from streams/files in PDE format.
info.bioinfweb.jphyloio.formats.phylip	Contains classes for reading from and writing to streams/files in Phylip format.
info.bioinfweb.jphyloio.formats.phyloxml	Contains classes for reading from and writing to streams/files in PhyloXML format.
info.bioinfweb.jphyloio.formats.xtg	Contains classes for reading from and writing to streams/files in XTG format.

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.factory

Methods in info.bioinfweb.jphyloio.factory that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected abstract JPhyloIOFormatInfo	AbstractSingleReaderWriterFactory.createFormatInfo()
JPhyloIOFormatInfo	AbstractSingleReaderWriterFactory.getFormatInfo()
JPhyloIOFormatInfo	SingleReaderWriterFactory.getFormatInfo() Returns an information objects describing the target format and providing according file filters.
JPhyloIOFormatInfo	JPhyloIOReaderWriterFactory.getFormatInfo(java.lang.String formatID) Returns an information object for the specified format.

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formatinfo

Classes in info.bioinfweb.jphyloio.formatinfo that implement JPhyloIOFormatInfo

Modifier and Type	Class and Description
class	DefaultFormatInfo Default implementation of JPhyloIOFormatInfo.

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.fasta

Methods in info.bioinfweb.jphyloio.formats.fasta that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	FASTAFactory.createFormatInfo() Returns the FASTA format info including a file filter that specifies the file extensions listed here.

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.mega

Methods in info.bioinfweb.jphyloio.formats.mega that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	MEGAFactory.createFormatInfo()

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.newick

Methods in info.bioinfweb.jphyloio.formats.newick that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	NewickFactory.createFormatInfo()

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.nexml

Methods in info.bioinfweb.jphyloio.formats.nexml that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	NeXMLFactory.createFormatInfo()

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.nexus

Methods in info.bioinfweb.jphyloio.formats.nexus that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	NexusFactory.createFormatInfo()

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.pde

Methods in info.bioinfweb.jphyloio.formats.pde that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	PDEFactory.createFormatInfo()

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.phylip

Methods in info.bioinfweb.jphyloio.formats.phylip that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	PhylipFactory.createFormatInfo()
protected JPhyloIOFormatInfo	SequentialPhylipFactory.createFormatInfo()
protected JPhyloIOFormatInfo	AbstractPhylipFactory.createFormatInfo(java.lang.String formatID, java.lang.String formatName, java.util.Set<java.lang.String> supportedReaderParameters, java.util.Set<java.lang.String> supportedWriterParameters, java.lang.String adapterDescription)

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.phyloxml

Methods in info.bioinfweb.jphyloio.formats.phyloxml that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	PhyloXMLFactory.createFormatInfo()

Uses of JPhyloIOFormatInfo in info.bioinfweb.jphyloio.formats.xtg

Methods in info.bioinfweb.jphyloio.formats.xtg that return JPhyloIOFormatInfo

Modifier and Type	Method and Description
protected JPhyloIOFormatInfo	XTGFactory.createFormatInfo()