info.bioinfweb.jphyloio.formats

Class NodeEdgeInfo

java.lang.Object

info.bioinfweb.jphyloio.formats.NodeEdgeInfo

public class NodeEdgeInfo
extends java.lang.Object

This class is used by JPhyloIOEventReaders processing phylogenetic trees or networks to model nodes and edges.

Author:

Sarah Wiechers, Ben Stöver

Constructor Summary

Constructors

Constructor and Description
NodeEdgeInfo(java.lang.String id, double length, java.util.Collection<JPhyloIOEvent> nestedNodeEvents, java.util.Collection<JPhyloIOEvent> nestedEdgeEvents)

Method Summary

Modifier and Type	Method and Description
java.lang.String	getID()
java.lang.String	getLabel()
double	getLength()
java.util.Collection<JPhyloIOEvent>	getNestedEdgeEvents()
java.util.Collection<JPhyloIOEvent>	getNestedNodeEvents()
java.lang.String	getSource()
java.lang.String	getTarget()
boolean	isRoot()
void	setIsRoot(boolean isRoot)
void	setLabel(java.lang.String label)
void	setLength(double length)
void	setSource(java.lang.String source)
void	setTarget(java.lang.String target)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NodeEdgeInfo

public NodeEdgeInfo(java.lang.String id,
                    double length,
                    java.util.Collection<JPhyloIOEvent> nestedNodeEvents,
                    java.util.Collection<JPhyloIOEvent> nestedEdgeEvents)

Method Detail

getID

public java.lang.String getID()

getLabel

public java.lang.String getLabel()

setLabel

public void setLabel(java.lang.String label)

isRoot

public boolean isRoot()

setIsRoot

public void setIsRoot(boolean isRoot)

getSource

public java.lang.String getSource()

setSource

public void setSource(java.lang.String source)

getTarget

public java.lang.String getTarget()

setTarget

public void setTarget(java.lang.String target)

getLength

public double getLength()

setLength

public void setLength(double length)

getNestedNodeEvents

public java.util.Collection<JPhyloIOEvent> getNestedNodeEvents()

getNestedEdgeEvents

public java.util.Collection<JPhyloIOEvent> getNestedEdgeEvents()