info.bioinfweb.jphyloio.formats

Interface JPhyloIOFormatIDs

All Known Implementing Classes:

AbstractPhylipFactory, FASTAFactory, JPhyloIOReaderWriterFactory, MEGAFactory, NewickFactory, NeXMLFactory, NexusFactory, PDEFactory, PhylipFactory, PhyloXMLFactory, SequentialPhylipFactory, XTGFactory

public interface JPhyloIOFormatIDs

Provides unique IDs for all formats that are supported by JPhyloIO.

Additional formats may be defined by application developers or third party libraries. Such additional definitions should also follow the reverse domain name pattern as the IDs defined here do (e.g. com.example.myformat) and never start with "info.bioinfweb.jphyloio.", which is the reserved prefix for JPhyloIO.

Since:

0.0.0

Author:

Ben Stöver

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	FASTA_FORMAT_ID
static java.lang.String	FORMAT_ID_PREFIX The prefix of all format IDs defined in JPhyloIO.
static java.lang.String	MEGA_FORMAT_ID
static java.lang.String	NEWICK_FORMAT_ID
static java.lang.String	NEXML_FORMAT_ID
static java.lang.String	NEXUS_FORMAT_ID
static java.lang.String	PDE_FORMAT_ID
static java.lang.String	PHYLIP_FORMAT_ID
static java.lang.String	PHYLOXML_FORMAT_ID
static java.lang.String	SEQUENTIAL_PHYLIP_FORMAT_ID
static java.lang.String	XTG_FORMAT_ID

Field Detail

FORMAT_ID_PREFIX

static final java.lang.String FORMAT_ID_PREFIX

The prefix of all format IDs defined in JPhyloIO. Do not define custom IDs starting with this prefix.

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Constant Field Values

NEXML_FORMAT_ID

static final java.lang.String NEXML_FORMAT_ID

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Constant Field Values

NEXUS_FORMAT_ID

static final java.lang.String NEXUS_FORMAT_ID

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Constant Field Values

NEWICK_FORMAT_ID

static final java.lang.String NEWICK_FORMAT_ID

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Constant Field Values

PHYLOXML_FORMAT_ID

static final java.lang.String PHYLOXML_FORMAT_ID

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Constant Field Values

FASTA_FORMAT_ID

static final java.lang.String FASTA_FORMAT_ID

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Constant Field Values

PHYLIP_FORMAT_ID

static final java.lang.String PHYLIP_FORMAT_ID

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Constant Field Values

SEQUENTIAL_PHYLIP_FORMAT_ID

static final java.lang.String SEQUENTIAL_PHYLIP_FORMAT_ID

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Constant Field Values

MEGA_FORMAT_ID

static final java.lang.String MEGA_FORMAT_ID

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Constant Field Values

XTG_FORMAT_ID

static final java.lang.String XTG_FORMAT_ID

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Constant Field Values

PDE_FORMAT_ID

static final java.lang.String PDE_FORMAT_ID

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Constant Field Values