info.bioinfweb.jphyloio.formats.newick

Class DefaultNewickReaderNodeLabelProcessor

java.lang.Object

info.bioinfweb.jphyloio.formats.newick.DefaultNewickReaderNodeLabelProcessor

All Implemented Interfaces:

NewickReaderNodeLabelProcessor

public class DefaultNewickReaderNodeLabelProcessor
extends java.lang.Object
implements NewickReaderNodeLabelProcessor

Default implementation of NewickReaderNodeLabelProcessor that returns the original name unchanged.

Author:

Ben Stöver

Constructor Summary

Constructors

Constructor and Description
DefaultNewickReaderNodeLabelProcessor()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getLinkedOTUID(java.lang.String processedLabel) Returns the OTU ID that is associated with the specified label.
java.lang.String	processLabel(java.lang.String originalLabel, boolean isInternal) Processes a label according to the format modeled by this implementation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DefaultNewickReaderNodeLabelProcessor

public DefaultNewickReaderNodeLabelProcessor()

Method Detail

processLabel

public java.lang.String processLabel(java.lang.String originalLabel,
                                     boolean isInternal)

Description copied from interface: NewickReaderNodeLabelProcessor

Processes a label according to the format modeled by this implementation.

Specified by:

processLabel in interface NewickReaderNodeLabelProcessor

Parameters:

originalLabel - the label as it was read from the Newick string

isInternal - defines whether the node carrying this label is an internal node or not

Returns:

the processed label

getLinkedOTUID

public java.lang.String getLinkedOTUID(java.lang.String processedLabel)

Description copied from interface: NewickReaderNodeLabelProcessor

Returns the OTU ID that is associated with the specified label.

Specified by:

getLinkedOTUID in interface NewickReaderNodeLabelProcessor

Parameters:

processedLabel - the processed label as it was returned by a call if #processLabel(String)

Returns:

the linked OTU ID or null if no associated OTU ID exists